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MeSHHeading2vec: a new method for representing MeSH headings as vectors based on graph embedding algorithm
期刊论文
BRIEFINGS IN BIOINFORMATICS, 2021, 卷号: 22, 期号: 2, 页码: 2085-2095
作者:
Guo,ZH (Guo, Zhen-Hao) 1
;
You,ZH (You,Zhu-Hong) 1, 2
;
Huang,DS (Huang, De-Shuang) 3, 4
;
Yi, HC (Yi, Hai-Cheng) 2
;
Zheng, K (Zheng, Kai) 5
收藏
  |  
浏览/下载:144/0
  |  
提交时间:2021/08/09
MeSHHeading2vecMeSH relationship networkgraph embeddingcomputational prediction model
Physical and virtual carbon metabolism of global cities
期刊论文
Nature Communications, 2020, 卷号: 11
作者:
Shaoqing Chen1,2,3, Bin Chen1 *, Kuishuang Feng 4, Zhu Liu 5*, Neil Fromer6, Xianchun Tan7, Ahmed Alsaedi8, Tasawar Hayat8,9, Helga Weisz 10,11, Hans Joachim Schellnhuber10 & Klaus Hubacek 12,13,14*
收藏
  |  
浏览/下载:18/0
  |  
提交时间:2021/01/16
A deep learning-based method for drug-target interaction prediction based on long short-term memory neural network
期刊论文
BMC MEDICAL INFORMATICS AND DECISION MAKING, 2020, 卷号: 20, 期号: 1, 页码: 1-9
作者:
Wang, YB (Wang, Yan-Bin)[ 1,2 ]
;
You, ZH (You, Zhu-Hong)[ 1 ]
;
Yang, S (Yang, Shan)[ 1 ]
;
Yi, HC (Yi, Hai-Cheng)[ 1,2 ]
;
Chen, ZH (Chen, Zhan-Heng)[ 1,2 ]
收藏
  |  
浏览/下载:34/0
  |  
提交时间:2020/04/21
Drug-target
Deep learning
Legendre moment
Long short-term memory
A learning based framework for diverse biomolecule relationship prediction in molecular association network
期刊论文
COMMUNICATIONS BIOLOGY, 2020, 卷号: 3, 期号: 1, 页码: 1-9
作者:
Guo, ZH (Guo, Zhen-Hao)[ 1,2 ]
;
You, ZH (You, Zhu-Hong)[ 1,2 ]
;
Huang, DS (Huang, De-Shuang)[ 3 ]
;
Yi, HC (Yi, Hai-Cheng)[ 1,2 ]
;
Chen, ZH (Chen, Zhan-Heng)[ 1,2 ]
收藏
  |  
浏览/下载:36/0
  |  
提交时间:2020/04/21
RPI-SE: a stacking ensemble learning framework for ncRNA-protein interactions prediction using sequence information
期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 期号: 1, 页码: 1-10
作者:
Yi, HC (Yi, Hai-Cheng)[ 1,2 ]
;
You, ZH (You, Zhu-Hong)[ 1,2 ]
;
Wang, MN (Wang, Mei-Neng)[ 3 ]
;
Guo, ZH (Guo, Zhen-Hao)[ 1 ]
;
Wang, YB (Wang, Yan-Bin)[ 1 ]
收藏
  |  
浏览/下载:23/0
  |  
提交时间:2020/04/21
Sequence analysis
RNA-protein interaction
ncRNA
Ensemble learning
Position weight matrix
Legendre moments
Prediction of Drug-Target Interactions From Multi-Molecular Network Based on Deep Walk Embedding Model
期刊论文
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY, 2020, 卷号: 8, 期号: 6, 页码: 1-9
作者:
Chen, ZH (Chen, Zhan-Heng)[ 1,2 ]
;
You, ZH (You, Zhu-Hong)[ 1,2 ]
;
Guo, ZH (Guo, Zhen-Hao)[ 1,2 ]
;
Yi, HC (Yi, Hai-Cheng)[ 1,2 ]
;
Luo, GX (Luo, Gong-Xu)[ 1,2 ]
收藏
  |  
浏览/下载:36/0
  |  
提交时间:2020/09/09
drug-target interactions
molecular association network
attribute feature
behavior feature
random forest
Bioentity2vec: Attribute- and behavior-driven representation for predicting multi-type relationships between bioentities
期刊论文
GIGASCIENCE, 2020, 卷号: 9, 期号: 6, 页码: 1-12
作者:
Guo, ZH (Guo, Zhen-Hao)[ 1,2 ]
;
You, ZH (You, Zhu-Hong)[ 1,2 ]
;
Wang, YB (Wang, Yan-Bin)[ 3 ]
;
Huang, DS (Huang, De-Shuang)[ 4 ]
;
Yi, HC (Yi, Hai-Cheng)[ 1,2 ]
收藏
  |  
浏览/下载:38/0
  |  
提交时间:2020/11/04
network biology
system biology
Bioentity2vec
multi-type relationship prediction
In Silico Prediction of Small Molecule-miRNA Associations Based on the HeteSim Algorithm
期刊论文
MOLECULAR THERAPY-NUCLEIC ACIDS, 2019, 卷号: 14, 期号: 3, 页码: 274-286
作者:
Qu, J (Qu, Jia)[ 1 ]
;
Chen, X (Chen, Xing)[ 1 ]
;
Sun, YZ (Sun, Ya-Zhou)[ 2 ]
;
Zhao, Y (Zhao, Yan)[ 1 ]
;
Cai, SB (Cai, Shu-Bin)[ 2 ]
收藏
  |  
浏览/下载:82/0
  |  
提交时间:2019/05/14
Prediction of Self-Interacting Proteins from Protein Sequence Information Based on Random Projection Model and Fast Fourier Transform
期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2019, 卷号: 20, 期号: 4, 页码: 1-15
作者:
Chen, ZH (Chen, Zhan-Heng)[ 1,2 ]
;
You, ZH (You, Zhu-Hong)[ 1,2 ]
;
Li, LP (Li, Li-Ping)[ 1 ]
;
Wang, YB (Wang, Yan-Bin)[ 1 ]
;
Wong, L (Wong, Leon)[ 1,2 ]
收藏
  |  
浏览/下载:58/0
  |  
提交时间:2019/05/16
self-interacting proteins
position-specific scoring matrix
fast Fourier transform
random projection
Identification of potential plasma biomarkers and metabolic dysfunction for unstable angina pectoris and its complication based on global metabolomics
期刊论文
Bioscience reports, 2019, 卷号: 39
作者:
Wang Juan[1]
;
Xu Wenjuan[2]
;
Zhao Huihui[3]
;
Chen Jianxin[4]
;
Zhu Bin[5]
收藏
  |  
浏览/下载:37/0
  |  
提交时间:2019/04/22
Metabolomics
diagnostic biomarker
tryptophan metabolism
unstable angina pectoris
unstable angina pectoris complicated with diabetes mellitus
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