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山东大学 [15]
上海药物研究所 [1]
中国医学科学院 北京... [1]
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期刊论文 [13]
会议论文 [4]
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2018 [3]
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BGSA: a bit-parallel global sequence alignment toolkit for multi-core and many-core architectures
期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 13, 页码: 2306-2308
作者:
Zhang, Jikai
;
Lan, Haidong
;
Chan, Yuandong
;
Shang, Yuan
;
Schmidt, Bertil
收藏
  |  
浏览/下载:12/0
  |  
提交时间:2019/12/11
Efficient parallel sort on AVX-512-based multi-core and many-core architectures
期刊论文
Proceedings - 21st IEEE International Conference on High Performance Computing and Communications, 17th IEEE International Conference on Smart City and 5th IEEE International Conference on Data Science and Systems, HPCC/SmartCity/DSS 2019, 2019, 页码: 168-176
作者:
Yin, Zekun
;
Zhang, Tianyu
;
Muller, Andre
;
Liu, Hui
;
Wei, Yanjie
收藏
  |  
浏览/下载:4/0
  |  
提交时间:2019/12/11
AVX512
Bitonic sort
KNL
Merge sort
Skylate-EP
Sort
XLCS: A new bit-parallel longest common subsequence algorithm on xeon phi clusters
期刊论文
Proceedings - 21st IEEE International Conference on High Performance Computing and Communications, 17th IEEE International Conference on Smart City and 5th IEEE International Conference on Data Science and Systems, HPCC/SmartCity/DSS 2019, 2019, 页码: 1477-1483
作者:
Yin, Zekun
;
Zhang, Hao
;
Xu, Kai
;
Chan, Yuandong
;
Peng, Shaoliang
收藏
  |  
浏览/下载:9/0
  |  
提交时间:2019/12/11
bit-parallel algorithm
cluster computing
longest common subsequence
many-core architectures
Analysis of Outcomes in Ischemic vs Nonischemic Cardiomyopathy in Patients With Atrial Fibrillation A Report From the GARFIELD-AF Registry
期刊论文
2019, 卷号: 4, 期号: 6, 页码: 526-548
作者:
Corbalan, Ramon
;
Bassand, Jean-Pierre
;
Illingworth, Laura
;
Ambrosio, Giuseppe
;
Camm, A. John
收藏
  |  
浏览/下载:72/0
  |  
提交时间:2020/01/03
MyPhi: Efficient Levenshtein Distance Computation on Xeon Phi Based Architectures
期刊论文
CURRENT BIOINFORMATICS, 2018, 卷号: 13, 期号: 5, 页码: 479-486
作者:
Chan, Yuandong
;
Xu, Kai
;
Lan, Haidong
;
Schmidt, Bertil
;
Peng, Shaoliang
收藏
  |  
浏览/下载:45/0
  |  
提交时间:2019/12/11
Approximate string matching
Myers algorithm
Levenshtein distance
SIMD
Xeon Phi
KNC
KNL
Fast and efficient short read mapping based on a succinct hash index
期刊论文
BMC BIOINFORMATICS, 2018, 卷号: 19, 期号: 1
作者:
Zhang, Haowen
;
Chan, Yuandong
;
Fan, Kaichao
;
Schmidt, Bertil
;
Liu, Weiguo
收藏
  |  
浏览/下载:6/0
  |  
提交时间:2019/12/11
Next-generation sequencing
Read mapping
Hash index
Seed selection
SPECTR: Scalable parallel short read error correction on multi-core and many-core architectures
期刊论文
ACM International Conference Proceeding Series, 2018
作者:
Xu, Kai
;
Kobus, Robin
;
Chan, Yuandong
;
Gao, Ping
;
Meng, Xiangxu
收藏
  |  
浏览/下载:3/0
  |  
提交时间:2019/12/11
Bioinformatics
Bloom filter
MPI
Vectorization
Xeon Phi
MD3DOCKxb: An ultra-scalable CPU-MIC coordinated virtual screening framework
会议论文
作者:
Peng, Shaoliang
;
Zhang, Xiaoyu
;
Yang, Shunyun
;
Su, Wenhe
;
Zhang, Zhiqiang
收藏
  |  
浏览/下载:34/0
  |  
提交时间:2019/01/08
Mapping of option pricing algorithms onto heterogeneous many-core architectures
期刊论文
JOURNAL OF SUPERCOMPUTING, 2017, 卷号: 73, 期号: 9, 页码: 3715-3737
作者:
Zhang, Shuai
;
Wang, Zhao
;
Peng, Ying
;
Schmidt, Bertil
;
Liu, Weiguo
收藏
  |  
浏览/下载:3/0
  |  
提交时间:2019/12/12
Heterogeneous many-core architecture
European option pricing
American
option pricing
GPU
Xeon Phi
SWhybrid: A Hybrid-Parallel Framework for Large-Scale Protein Sequence Database Search
期刊论文
Proceedings - 2017 IEEE 31st International Parallel and Distributed Processing Symposium, IPDPS 2017, 2017, 页码: 42-51
作者:
Lan, Haidong
;
Liu, Weiguo
;
Liu, Yongchao
;
Schmidt, Bertil
收藏
  |  
浏览/下载:7/0
  |  
提交时间:2019/12/12
Biological sequence comparison
CUDA
Heterogeneous computing
SIMD
Xeon Phi
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