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Graph representation learning in bioinformatics: trends, methods and applications
期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 卷号: 23, 期号: 1, 页码: 1-16
作者:
Yi, HC (Yi, Hai-Cheng) [1] , [2]
;
You, ZH (You, Zhu-Hong) [3]
;
Huang, DS (Huang, De-Shuang) [4]
;
Kwoh, CK (Kwoh, Chee Keong) [5] , [6]
收藏
  |  
浏览/下载:18/0
  |  
提交时间:2022/05/06
graph representation learning
deeplearning
graph neural network
graph embedding
knowledge graph
healthcare
An Efficient Computational Model for Large-Scale Prediction of Protein-Protein Interactions Based on Accurate and Scalable Graph Embedding
期刊论文
FRONTIERS IN GENETICS, 2021, 卷号: 12, 期号: 2, 页码: 1-10
作者:
Su, XR (Su, Xiao-Rui)[ 1,2,3 ]
;
You, ZH (You, Zhu-Hong)[ 1,2,3 ]
;
Hu, L (Hu, Lun)[ 1,2,3 ]
;
Huang, YA (Huang, Yu-An)[ 1 ]
;
Wang, Y (Wang, Yi)[ 1,2,3 ]
收藏
  |  
浏览/下载:33/0
  |  
提交时间:2021/05/24
large-scale
protein-protein interaction
GraphZoom
weighted graph
graph embedding
In silico drug repositioning using deep learning and comprehensive similarity measures
期刊论文
BMC BIOINFORMATICS, 2021, 卷号: 22, 期号: 增刊3, 页码: 1-14
作者:
Yi, HC (Yi, Hai-Cheng) 1 , 2
;
You, ZH (You, Zhu-Hong) 1
;
Wang, L (Wang, Lei) 1
;
Su, XR (Su, Xiao-Rui) 1 , 2
;
Zhou, X (Zhou, Xi) 1
收藏
  |  
浏览/下载:39/0
  |  
提交时间:2021/07/14
Drug repositioningDrug-disease interactionGated recurrent unitsGaussian interaction profile kernelMachine learning
MeSHHeading2vec: a new method for representing MeSH headings as vectors based on graph embedding algorithm
期刊论文
BRIEFINGS IN BIOINFORMATICS, 2021, 卷号: 22, 期号: 2, 页码: 2085-2095
作者:
Guo,ZH (Guo, Zhen-Hao) 1
;
You,ZH (You,Zhu-Hong) 1, 2
;
Huang,DS (Huang, De-Shuang) 3, 4
;
Yi, HC (Yi, Hai-Cheng) 2
;
Zheng, K (Zheng, Kai) 5
收藏
  |  
浏览/下载:147/0
  |  
提交时间:2021/08/09
MeSHHeading2vecMeSH relationship networkgraph embeddingcomputational prediction model
A deep learning-based method for drug-target interaction prediction based on long short-term memory neural network
期刊论文
BMC MEDICAL INFORMATICS AND DECISION MAKING, 2020, 卷号: 20, 期号: 1, 页码: 1-9
作者:
Wang, YB (Wang, Yan-Bin)[ 1,2 ]
;
You, ZH (You, Zhu-Hong)[ 1 ]
;
Yang, S (Yang, Shan)[ 1 ]
;
Yi, HC (Yi, Hai-Cheng)[ 1,2 ]
;
Chen, ZH (Chen, Zhan-Heng)[ 1,2 ]
收藏
  |  
浏览/下载:34/0
  |  
提交时间:2020/04/21
Drug-target
Deep learning
Legendre moment
Long short-term memory
A learning based framework for diverse biomolecule relationship prediction in molecular association network
期刊论文
COMMUNICATIONS BIOLOGY, 2020, 卷号: 3, 期号: 1, 页码: 1-9
作者:
Guo, ZH (Guo, Zhen-Hao)[ 1,2 ]
;
You, ZH (You, Zhu-Hong)[ 1,2 ]
;
Huang, DS (Huang, De-Shuang)[ 3 ]
;
Yi, HC (Yi, Hai-Cheng)[ 1,2 ]
;
Chen, ZH (Chen, Zhan-Heng)[ 1,2 ]
收藏
  |  
浏览/下载:37/0
  |  
提交时间:2020/04/21
Integrative Construction and Analysis of Molecular Association Network in Human Cells by Fusing Node Attribute and Behavior Information
期刊论文
MOLECULAR THERAPY-NUCLEIC ACIDS, 2020, 卷号: 19, 期号: 3, 页码: 498-506
作者:
Guo, ZH (Guo, Zhen-Hao)[ 1,2 ]
;
You, ZH (You, Zhu-Hong)[ 1,2 ]
;
Yi, HC (Yi, Hai-Cheng)[ 1,2 ]
收藏
  |  
浏览/下载:36/0
  |  
提交时间:2020/04/21
RPI-SE: a stacking ensemble learning framework for ncRNA-protein interactions prediction using sequence information
期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 期号: 1, 页码: 1-10
作者:
Yi, HC (Yi, Hai-Cheng)[ 1,2 ]
;
You, ZH (You, Zhu-Hong)[ 1,2 ]
;
Wang, MN (Wang, Mei-Neng)[ 3 ]
;
Guo, ZH (Guo, Zhen-Hao)[ 1 ]
;
Wang, YB (Wang, Yan-Bin)[ 1 ]
收藏
  |  
浏览/下载:23/0
  |  
提交时间:2020/04/21
Sequence analysis
RNA-protein interaction
ncRNA
Ensemble learning
Position weight matrix
Legendre moments
Learning Representations to Predict Intermolecular Interactions on Large-Scale Heterogeneous Molecular Association Network
期刊论文
ISCIENCE, 2020, 卷号: 23, 期号: 7, 页码: 1-16
作者:
Yi, HC (Yi, Hai-Cheng)[ 1,2 ]
;
You, ZH (You, Zhu-Hong)[ 1,2 ]
;
Huang, DS (Huang, De-Shuang)[ 3 ]
;
Guo, ZH (Guo, Zhen-Hao)[ 1 ]
;
Chan, KCC (Chan, Keith C. C.)[ 4 ]
收藏
  |  
浏览/下载:29/0
  |  
提交时间:2020/09/09
MIPDH: A Novel Computational Model for Predicting microRNA-mRNA Interactions by DeepWalk on a Heterogeneous Network
期刊论文
ACS OMEGA, 2020, 卷号: 5, 期号: 28, 页码: 17022-17032
作者:
Wong, L (Wong, Leon)[ 1,2,3 ]
;
You, ZH (You, Zhu-Hong)[ 1,2,3 ]
;
Guo, ZH (Guo, Zhen-Hao)[ 1,2,3 ]
;
Yi, HC (Yi, Hai-Cheng)[ 1,2,3 ]
;
Chen, ZH (Chen, Zhan-Heng)[ 1,2,3 ]
收藏
  |  
浏览/下载:29/0
  |  
提交时间:2020/09/09
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