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北京大学 [5]
西安交通大学 [2]
湖南农业大学 [2]
中南大学 [1]
武汉大学 [1]
福州大学 [1]
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期刊论文 [13]
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2018 [3]
2017 [6]
2016 [1]
2015 [2]
2003 [1]
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SVSR: a Program to Simulate Structural Variations and Generate Sequencing Reads for Multiple Platforms
期刊论文
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2018
作者:
Yuan, Xiguo
;
Gao, Meihong
;
Bai, Jun
;
Duan, Junbo
收藏
  |  
浏览/下载:9/0
  |  
提交时间:2019/11/19
Benchmark testing
Biological cells
Copy number variations
Genomics
Indels
Inversions and translocations
Sequence reads
Sequential analysis
SNPs
Structural variations
Encoding-Aware Data Placement for Efficient Degraded Reads in XOR-Coded Storage Systems: Algorithms and Evaluation
期刊论文
IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS, 2018, 卷号: 29, 页码: 2757-2770
作者:
Shen, Zhirong
;
Lee, Patrick P. C.
;
Shu, Jiwu
;
Guo, Wenzhong
收藏
  |  
浏览/下载:6/0
  |  
提交时间:2019/11/21
XOR-coded storage systems
Encoding-aware data placement
degraded reads
Next-Generation Sequencing of Cerebrospinal Fluid for the Diagnosis of Neurocysticercosis
期刊论文
2018, 卷号: 9, 页码: 471
作者:
Fan, Siyuan
;
Qiao, Xiaodong
;
Liu, Lei
;
Wu, Honglong
;
Zhou, Jiali
收藏
  |  
浏览/下载:18/0
  |  
提交时间:2020/01/03
neurocysticercosis
Taenia solium
cerebrospinal fluid
next-generation sequencing
reads
The complete mitochondrial genome of a skipper Burara striata (Lepidoptera: Hesperiidae)
期刊论文
MITOCHONDRIAL DNA PART B-RESOURCES, 2017
Zhang, Jing
;
Cong, Qian
;
Shen, Jinhui
;
Wang, Rongjiang
;
Grishin, Nick V.
收藏
  |  
浏览/下载:34/0
  |  
提交时间:2017/12/03
Next-generation sequencing
phylogeny
China
Fluted Awlet
Bibasis
HESPERIOIDEA
BUTTERFLIES
SPECIATION
READS
Ultrasensitive and high-efficiency screen of de novo low-frequency mutations by o2n-seq
期刊论文
NATURE COMMUNICATIONS, 2017
Wang, Kaile
;
Lai, Shujuan
;
Yang, Xiaoxu
;
Zhu, Tianqi
;
Lu, Xuemei
;
Wu, Chung-I
;
Ruan, Jue
收藏
  |  
浏览/下载:4/0
  |  
提交时间:2017/12/03
SHORT SEQUENCE READS
RARE MUTATIONS
PARALLEL
CANCER
SAMPLES
Systematic review of next-generation sequencing simulators: computational tools, features and perspectives
期刊论文
BRIEFINGS IN FUNCTIONAL GENOMICS, 2017
Zhao, Min
;
Liu, Di
;
Qu, Hong
收藏
  |  
浏览/下载:6/0
  |  
提交时间:2017/12/03
simulator
high-throughput next-generation sequencing
COPY NUMBER VARIATION
MODEL BASED SIMULATOR
READS SIMULATOR
GENOME
ACCURATE
ALGORITHMS
METAGENOMICS
DATASETS
PROGRAM
An Algorithm with Base-Pair Resolution for Identifying Cancer Heterogeneity by Estimating Multiple Clonal Haplotypes
期刊论文
Hsi-An Chiao Tung Ta Hsueh/Journal of Xi'an Jiaotong University, 2017, 卷号: 51, 页码: 92-96
作者:
Geng, Yu
;
Zhao, Zhongmeng
;
Liu, Jianye
;
Xu, Jing
;
Cui, Daibing
收藏
  |  
浏览/下载:3/0
  |  
提交时间:2019/11/26
Allelic variants
Cancer genome
Cancer heterogeneities
Genomic sequencing
Haplotypes
Multi-library sequencing
Paired-end reads
Posterior probability
De novo transcriptome sequencing and analysis of the juvenile and adult stages of Fasciola gigantica
期刊论文
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, 2017, 卷号: 51, 页码: 33-40
作者:
Zhang, Xiao-Xuan
;
Cong, Wei
;
Elsheikha, Hany M.
;
Liu, Guo-Hua
;
Ma, Jian-Gang
收藏
  |  
浏览/下载:7/0
  |  
提交时间:2019/12/23
Nr
non-redundant protein database
GO
Gene Ontology
KOG
EuKaryotic Orthologous Groups of proteins database
KEGG
Kyoto Encyclopedia of Genes and Genomes
SSR
simple sequence repeat
NCBI
National Center for Biotechnology Information
RPKM
reads per kb per million reads
SNPs
single nucleotide polymorphisms
Nt
non-redundant nucleotide sequences database
Fasciola gigantica
De novo transcriptome
Differentially expressed genes
Host-pathogen interaction
Next-generation sequencing
Investigating the regulatory roles of the microRNAs and the Argonaute 1-enriched small RNAs in plant metabolism
期刊论文
Gene, 2017, 卷号: 628, 页码: 180-189
作者:
Qin, Jingping
;
Tang, Zhonghai*
;
Ma, Xiaoxia
;
Meng, Yijun*
收藏
  |  
浏览/下载:6/0
  |  
提交时间:2019/12/23
AGO1
Argonaute 1
miRNA
microRNA
sRNA
small RNA
siRNA
small interfering RNA
PMN
Plant Metabolic Network
GO
Gene Ontology
KEGG
Kyoto Encyclopedia of Genes and Genomes
SPL
Squamosa promoter binding Protein-Like
HTS
high-throughput sequencing
RPM
reads per million
PAIR
Predicted Arabidopsis Interactome Resource
DIPOS
Database of Interacting Proteins in Oryza sativa
TAIR
The Arabidopsis Information Resource
MSU
Michigan State University
CSD
Copper/zinc Superoxide Dismutase
SSL
Strictosidine Synthase-Like
GEO
Gene Expression Omnibus
SEA
Singular Enrichment Analysis
RAP
Rice Annotation Project
Argonaute 1 (AGO1)
Degradome
microRNA (miRNA)
Network
Metabolism
Protein-protein interaction
Small RNA (sRNA)
Improving the microbial community reconstruction at the genus level by multiple 16S rRNA regions
期刊论文
JOURNAL OF THEORETICAL BIOLOGY, 2016
Wang, Shengqin
;
Sun, Beili
;
Tu, Jing
;
Lu, Zuhong
收藏
  |  
浏览/下载:3/0
  |  
提交时间:2017/12/03
Genus-specific fragment
High throughput sequencing
Hyper-variable region
HUMAN GUT MICROBIOTA
IDENTIFICATION
PRIMERS
DIVERSITY
DATABASE
READS
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