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复旦大学上海医学院 [4]
植物研究所 [3]
北京大学 [2]
理论物理研究所 [1]
西双版纳热带植物园 [1]
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期刊论文 [8]
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Nuclear phylotranscriptomics and phylogenomics support numerous polyploidization events and hypotheses for the evolution of rhizobial nitrogen-fixing symbiosis in Fabaceae
期刊论文
MOLECULAR PLANT, 2021, 卷号: 14, 期号: 5, 页码: 748-773
作者:
Zhao, Yiyong
;
Zhang, Rong
;
Jiang, Kai-Wen
;
Qi, Ji
;
Hu, Yi
收藏
  |  
浏览/下载:55/0
  |  
提交时间:2021/06/16
Fabaceae
Leguminosae
nuclear phylogeny
divergence times
whole-genome duplication
rhizobial nodulation
Benchmarking of alignment-free sequence comparison methods
期刊论文
GENOME BIOLOGY, 2019, 卷号: 20
作者:
Tang, Kujin
;
Dencker, Thomas
;
Lau, Anna Katharina
;
Roehling, Sophie
;
Choi, Jae Jin
收藏
  |  
浏览/下载:15/0
  |  
提交时间:2019/12/05
Alignment-free
Sequence comparison
Benchmark
Whole-genome phylogeny
Horizontal gene transfer
Web service
The complete chloroplast DNA sequence of Trapa maximowiczii Korsh. (Trapaceae), and comparative analysis with other Myrtales species
期刊论文
AQUATIC BOTANY, 2017, 卷号: 143, 页码: 54-62
作者:
Xue, Zhi-Qing
;
Xue, Jian-Hua
;
Victorovna, Kryukova Maria
;
Ma, Ke-Ping
收藏
  |  
浏览/下载:9/0
  |  
提交时间:2022/03/28
Trapa maximowiczii
Myrtales
Chloroplast
Whole genome sequencing
Phylogeny
Multiple Polyploidization Events across Asteraceae with Two Nested Events in the Early History Revealed by Nuclear Phylogenomics
期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2016, 卷号: 33, 期号: 11
作者:
Huang, Chien-Hsun
;
Zhang, Caifei
;
Liu, Mian
;
Hu, Yi
;
Gao, Tiangang
收藏
  |  
浏览/下载:9/0
  |  
提交时间:2019/12/05
Asteraceae
divergence time estimation
orthologous nuclear gene
phylogeny
transcriptome
whole-genome duplication
Multiple Polyploidization Events across Asteraceae with Two Nested Events in the Early History Revealed by Nuclear Phylogenomics
期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2016, 卷号: 33, 期号: 11
作者:
Huang, Chien-Hsun
;
Zhang, Caifei
;
Liu, Mian
;
Hu, Yi
;
Gao, Tiangang
收藏
  |  
浏览/下载:0/0
  |  
提交时间:2022/07/05
Asteraceae
divergence time estimation
orthologous nuclear gene
phylogeny
transcriptome
whole-genome duplication
Multiple Polyploidization Events across Asteraceae with Two Nested Events in the Early History Revealed by Nuclear Phylogenomics
期刊论文
MOLECULAR BIOLOGY AND EVOLUTION, 2016, 卷号: 33, 期号: 11, 页码: 2820-2835
作者:
Huang, Chien-Hsun
;
Zhang, Caifei
;
Liu, Mian
;
Hu, Yi
;
Gao, Tiangang
收藏
  |  
浏览/下载:0/0
  |  
提交时间:2022/07/08
Asteraceae
divergence time estimation
orthologous nuclear gene
phylogeny
transcriptome
whole-genome duplication
New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing
其他
2014-01-01
Song, Kai
;
Ren, Jie
;
Reinert, Gesine
;
Deng, Minghua
;
Waterman, Michael S.
;
Sun, Fengzhu
收藏
  |  
浏览/下载:5/0
  |  
提交时间:2015/11/16
alignment-free
word patterns
Markov model
genome comparison
statistical power
NGS data
FEATURE FREQUENCY PROFILES
COMPOSITION VECTOR METHOD
WHOLE-PROTEOME PHYLOGENY
K-WORD MATCHES
REGULATORY SEQUENCES
DNA-SEQUENCES
GENOME
ENHANCERS
BASE
RECONSTRUCTION
On K-peptide length in composition vector phylogeny of prokaryotes
期刊论文
COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2014, 卷号: 53
作者:
Zuo, Guanghong
;
Li, Qiang
;
Hao, Bailin
收藏
  |  
浏览/下载:4/0
  |  
提交时间:2019/12/19
Alignment-free
Whole-genome-based
Prokaryote phylogeny and taxonomy
Composition vector
Subtraction procedure
Normal and Compound Poisson Approximations for Pattern Occurrences in NGS Reads
其他
2012-01-01
Zhai, Zhiyuan
;
Reinert, Gesine
;
Song, Kai
;
Waterman, Michael S.
;
Luan, Yihui
;
Sun, Fengzhu
收藏
  |  
浏览/下载:7/0
  |  
提交时间:2015/11/16
algorithms
genome analysis
HMM
next generation sequencing
statistical models
FEATURE FREQUENCY PROFILES
WHOLE-PROTEOME PHYLOGENY
ALIGNMENT-FREE METHOD
FACTOR-BINDING SITES
DNA MOTIF DISCOVERY
MARKOV-CHAINS
EUKARYOTIC GENOMES
SEQ DATA
SEQUENCES
PROKARYOTES
Whole-Genome Based Bacterial Phylogeny and Taxonomy Using Composition Vector (CVTree) Method
会议论文
中国浙江杭州
作者:
Hao BL(郝柏林)
收藏
  |  
浏览/下载:0/0
  |  
提交时间:2019/09/10
Whole-Genome Based Bacterial Phylogeny and Taxonomy Using Composition Vector
Method
CVTree
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