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PIM-Align: A Processing-in-Memory Architecture for FM-Index Search Algorithm
期刊论文
JOURNAL OF COMPUTER SCIENCE AND TECHNOLOGY, 2021, 卷号: 36, 期号: 1, 页码: 56-70
作者:
Li, Xue-Qi
;
Tan, Guang-Ming
;
Sun, Ning-Hui
收藏
  |  
浏览/下载:18/0
  |  
提交时间:2021/12/01
accelerator design
genomic sequence alignment
near-memory computing
Benchmarking of alignment-free sequence comparison methods
期刊论文
GENOME BIOLOGY, 2019, 卷号: 20
作者:
Tang, Kujin
;
Dencker, Thomas
;
Lau, Anna Katharina
;
Roehling, Sophie
;
Choi, Jae Jin
收藏
  |  
浏览/下载:15/0
  |  
提交时间:2019/12/05
Alignment-free
Sequence comparison
Benchmark
Whole-genome phylogeny
Horizontal gene transfer
Web service
PVTree: A Sequential Pattern Mining Method for Alignment Independent Phylogeny Reconstruction.
期刊论文
Genes, 2019, 卷号: 10
作者:
Kang Yongyong
;
Yang Xiaofei
;
Lin Jiadong
;
Ye Kai
收藏
  |  
浏览/下载:18/0
  |  
提交时间:2019/11/19
phylogenetic tree
alignment free
sequential pattern mining
multiple sequence alignment
Implementation of Hybrid Alignment Algorithm for Protein Database Search on the SW26010 Many-Core Processor
期刊论文
IEEE ACCESS, 2019, 卷号: 7, 页码: 128054-128063
作者:
Zhang, Hao
;
Fu, You
;
Feng, Lu-Bin
;
Zhang, Yue
;
Hua, Rong
收藏
  |  
浏览/下载:6/0
  |  
提交时间:2019/12/11
Load balance
many-core processor
parallel scalability
sequence
alignment
Sunway TaihuLight
Characterization of a moderately pathogenic pseudorabies virus variant isolated in China, 2014
期刊论文
INFECTION GENETICS AND EVOLUTION, 2019, 卷号: Vol.68, 页码: 161-171
作者:
Zhou, Mingming
;
Wu, Xiangju
;
Jiang, Dandan
;
Sui, Chao
;
Chen, Lei
收藏
  |  
浏览/下载:10/0
  |  
提交时间:2019/12/17
Pseudorabies virus
Moderately pathogenic strain
Sequence alignment
Sick piglets
Amino acid mutations
Characterization of a moderately pathogenic pseudorabies virus variant isolated in China, 2014
期刊论文
Infection, Genetics and Evolution, 2019, 卷号: Vol.68, 页码: 161-171
作者:
Mingming Zhou
;
Xiangju Wu
;
Dandan Jiang
;
Chao Sui
;
Lei Chen
收藏
  |  
浏览/下载:4/0
  |  
提交时间:2019/12/13
Pseudorabies
virus
Moderately
pathogenic
strain
Sequence
alignment
Sick
piglets
Amino
acid
mutations
Location deviations of DNA functional elements affected SNP mapping in the published databases and references
期刊论文
2019
作者:
Zheng Hewei
;
Zhao Xueying
;
Wang Hong
;
Ding Yu
;
Lu Xiaoyan
收藏
  |  
浏览/下载:13/0
  |  
提交时间:2020/01/03
functional elements
location deviation
precision medicine
sequence alignment
Population genomic analysis reveals that homoploid hybrid speciation can be a lengthy process
期刊论文
MOLECULAR ECOLOGY, 2018, 卷号: 27, 期号: 23, 页码: 4875-4887
作者:
Ru, Dafu
;
Sun, Yongshuai
;
Wang, Donglei
;
Chen, Yang
;
Wang, Tianjing
收藏
  |  
浏览/下载:37/0
  |  
提交时间:2019/04/22
Rna-seq
Gene Flow
Evolutionary History
Picea-likiangensis
Sequence Alignment
Pinus-densata
Spruce
Divergence
Generation
Tool
Gene cloning of a neutral ceramidase from the sphingolipid metabolic pathway based on transcriptome analysis of Amorphophallus muelleri
期刊论文
PLOS ONE, 2018, 卷号: 13, 期号: 3, 页码: e0194863
作者:
Zhong, Lin
;
Liu, Erxi
;
Yang, Chaozhu
;
Diao, Ying
;
Harijati, Nunung
收藏
  |  
浏览/下载:8/0
  |  
提交时间:2019/12/04
Sphingolipids,Transcriptome analysis,Metabolic pathways,Enzymes,Sequence databases,Genomic databases,Yeast,Sequence alignment
MicroRNAs and their targets by high-throughput sequencing and differentially expressed analysis in five Miscanthus species
期刊论文
Industrial Crops and Products, 2018, 卷号: 118, 页码: 196-205
作者:
Sheng, Jiajing
;
Zheng, Xingfei
;
Wang, Jia
;
Liu, Shuguang
;
Pang, Ming
收藏
  |  
浏览/下载:18/0
  |  
提交时间:2019/12/04
MiRNA
microRNA
EST
expressed sequence tag
NCBI
national center for biotechnology information
M. lutarioriparius
Miscanthus lutarioriparius
M. sacchariflorus
Miscanthus sacchariflorus
M. floridulus
Miscanthus floridulus
M. sinensis
Miscanthus sinensis
M. giganteous
Miscanthus giganteous
GO
gene ontology
Rfam
RNA family database
BLAST
basic local alignment tool
TPM
transcripts per million
eEF-1α
Eukaryotic elongation factor 1α
EIF-4α
eukaryotic initiation factor 4α
UBC
ubiquitin-conjugating enzyme
UBQ
ubiquitin
TUBB
β-tubulin
CYP
cyclophilin
Energy crop
Miscanthus
miRNAs
Targets genes
High-throughput sequencing
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