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COMTOP: Protein Residue-Residue Contact Prediction through Mixed Integer Linear Optimization
期刊论文
MEMBRANES, 2021, 卷号: 11, 期号: 7, 页码: 21
作者:
Reza, Md Selim
;
Zhang, Huiling
;
Hossain, Md Tofazzal
;
Jin, Langxi
;
Feng, Shengzhong
收藏
  |  
浏览/下载:18/0
  |  
提交时间:2021/12/01
protein residue-residue contact
contact prediction
mixed integer linear programming
machine learning
protein sequence
RPI-SE: a stacking ensemble learning framework for ncRNA-protein interactions prediction using sequence information
期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 期号: 1, 页码: 1-10
作者:
Yi, HC (Yi, Hai-Cheng)[ 1,2 ]
;
You, ZH (You, Zhu-Hong)[ 1,2 ]
;
Wang, MN (Wang, Mei-Neng)[ 3 ]
;
Guo, ZH (Guo, Zhen-Hao)[ 1 ]
;
Wang, YB (Wang, Yan-Bin)[ 1 ]
收藏
  |  
浏览/下载:23/0
  |  
提交时间:2020/04/21
Sequence analysis
RNA-protein interaction
ncRNA
Ensemble learning
Position weight matrix
Legendre moments
Combining High Speed ELM Learning with a Deep Convolutional Neural Network Feature Encoding for Predicting Protein-RNA Interactions
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 3, 页码: 972-980
作者:
Wang, L (Wang, Lei)[ 1 ]
;
You, ZH (You, Zhu-Hong)[ 2 ]
;
Huang, DS (Huang, De-Shuang)[ 3 ]
;
Zhou, FF (Zhou, Fengfeng)[ 4,5 ]
收藏
  |  
浏览/下载:34/0
  |  
提交时间:2020/12/09
Proteins
RNA
Convolution
Neural networks
Benchmark testing
Feature extraction
Sparse matrices
Convolution neural network
extreme learning machine
RNA-protein interactions
sequence
ARGA, a pipeline for primer evaluation on antibiotic resistance genes
期刊论文
ENVIRONMENT INTERNATIONAL, 2019, 卷号: 128, 页码: 137-145
作者:
Wei, Ziyan
;
Wu, Yueni
;
Feng, Kai
;
Yang, Min
;
Zhang, Yu
收藏
  |  
浏览/下载:3/0
  |  
提交时间:2020/10/23
Sequence database
ARGs
Protein
Nucleotide
Primer assessment
Annotation
WGDdetector: a pipeline for detecting whole genome duplication events using the genome or transcriptome annotations
期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 期号: x, 页码: -
作者:
Yang, Yongzhi
;
Li, Ying
;
Chen, Qiao
;
Sun, Yongshuai
;
Lu, Zhiqiang
收藏
  |  
浏览/下载:189/0
  |  
提交时间:2019/04/22
Sequence
Gene
Polyploidy
Protein
Plants
Evolution
Inference
Reveals
Dosage
Expression of TMEFF2 in Human Pancreatic Cancer Tissue and the Effects of TMEFF2 Knockdown on Cell, Proliferation, and Apoptosis in Human Pancreatic Cell Lines
期刊论文
MEDICAL SCIENCE MONITOR, 2019, 卷号: 25
作者:
Han, Hongchao
;
Li, Kailiang
;
Gu, Wenjing
;
Xu, Jie
;
Wang, Aikun
收藏
  |  
浏览/下载:16/0
  |  
提交时间:2019/12/05
Myeloid Cell Leukemia Sequence 1 Protein
Pancreatic Neoplasms
Protein Tyrosine Phosphatase, Non-Receptor Type 6
Vascular Endothelial Growth Factor A
Functional Site Discovery From Incomplete Training Data: A Case Study With Nucleic Acid-Binding Proteins
期刊论文
FRONTIERS IN GENETICS, 2019, 卷号: 10
作者:
Wang, Wenchuan
;
LangIois, Robert
;
Langlois, Marina
;
Genchev, Georgi Z.
;
Wang, Xiaolei
收藏
  |  
浏览/下载:133/0
  |  
提交时间:2019/12/05
machine learning
protein sequence and structural analysis
multiple-instance learning
decision trees
semi supervised learning
protein function annotation
DNA binding proteins
RNA binding proteins
Long noncoding RNA nuclear enriched abundant transcript 1 promotes the proliferation and migration of Schwann cells by regulating the miR-34a/Satb1 axis.
期刊论文
Journal of cellular physiology, 2019
作者:
Liu Xiangyu
;
Yu Xueyuan
;
He Youcheng
;
Wang Lu
收藏
  |  
浏览/下载:19/0
  |  
提交时间:2019/11/19
proliferation
long noncoding RNA nuclear enriched abundant transcript 1 (NEAT1)
Schwann cells
migration
miR-34a/sequence-binding protein-1 (Satb1)
Evaluation of selected traditional Chinese medical extracts for bone mineral density maintenance: A mechanistic study.
期刊论文
Journal of traditional and complementary medicine, 2019, 卷号: 9, 期号: 3
作者:
Rebhun John F
;
Du Qin
;
Hood Molly
;
Guo Hailing
;
Glynn Kelly M
收藏
  |  
浏览/下载:46/0
  |  
提交时间:2019/12/05
Anti-inflammatory
BMD, bone mineral density
BSA, bovine serum albumin
Bmp4, bone morphogenic protein 4
CRE, cyclic adenosine monophosphate response element
CREB, cyclic adenosine monophosphate response element binding protein
DEXA, dual-energy X-ray absorptiometry
DMSO, Dimethyl sulfoxide
Drynaria fortunei
E2, estradiol
ER, estrogen receptor
ERE, estrogen response element
Epimedium brevicornu
Estrogenic
FBS, fetal bovine serum
Fsk, forskolin
Hprt, hypoxanthine-guanine phosphoribosyl-transferase
IL-1, interleukin 1
LBD, ligand binding domain
LBM, low bone mass
M-CSF, macrophage colony-stimulating factor
MAPK, mitogen activated protein kinase
NF-κβ, nuclear factor kappa beta
OP, osteoporosis
Osteoporosis
PTH, parathyroid hormone
PTHrp, PTH related peptide
RANKL, receptor activator of nuclear factor kappa beta ligand
RLU, relative luminescence unit
ROI, region of interest
Runx2, runt-related transcription factor 2
SFM, serum free media
TCM, traditional Chinese medicine
TNFα, tumor necrosis factor alpha
TRAP, tartrate-resistant acid phosphatase
UAS, upstream activating sequence
cAMP, cyclic adenosine monophosphate
qPCR, quantitative polymerase chain reaction
Targeting Purinergic Receptor P2Y2 Prevents the Growth of Pancreatic Ductal Adenocarcinoma by Inhibiting Cancer Cell Glycolysis
期刊论文
CLINICAL CANCER RESEARCH, 2019, 卷号: 25, 页码: 1318-1330
作者:
Hu, Li-Peng
;
Zhang, Xiao-Xin
;
Jiang, Shu-Heng
;
Tao, Ling-Ye
;
Li, Qing
收藏
  |  
浏览/下载:33/0
  |  
提交时间:2019/12/02
adenosine triphosphate
ar c118925xx
gemcitabine
glucose transporter 1
hypoxia inducible factor 1alpha
Myc protein
platelet derived growth factor beta receptor
platelet derived growth factor receptor
protein kinase Yes
purinergic P2Y receptor antagonist
purinergic P2Y2 receptor
unclassified drug
Yes1 protein, Akt signaling
animal experiment
animal model
animal tissue
Article
cancer inhibition
cancer prognosis
cancer staging
controlled study
drug potentiation
glycolysis
human
human cell
human tissue
inflammation
lymph node metastasis
male
mouse
mouse model
nonhuman
overall survival
pancreas adenocarcinoma
pancreatic ductal carcinoma cell line
Pi3K/Akt signaling
priority journal
RNA sequence
tumor classification
tumor differentiation
tumor microenvironment
tumor volume
tumor xenograft
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