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A survey of current trends in computational predictions of protein-protein interactions
期刊论文
FRONTIERS OF COMPUTER SCIENCE, 2020, 卷号: 14, 期号: 4, 页码: 1-9
作者:
Wang, YB (Wang, Yanbin)[ 1,2 ]
;
You, ZH (You, Zhuhong)[ 1 ]
;
Li, LP (Li, Liping)[ 1 ]
;
Chen, ZH (Chen, Zhanheng)[ 1,2 ]
收藏
  |  
浏览/下载:27/0
  |  
提交时间:2020/04/23
proteomics
protein-protein interactions
protein feature extraction
computational proteomics
Combining High Speed ELM Learning with a Deep Convolutional Neural Network Feature Encoding for Predicting Protein-RNA Interactions
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 3, 页码: 972-980
作者:
Wang, L (Wang, Lei)[ 1 ]
;
You, ZH (You, Zhu-Hong)[ 2 ]
;
Huang, DS (Huang, De-Shuang)[ 3 ]
;
Zhou, FF (Zhou, Fengfeng)[ 4,5 ]
收藏
  |  
浏览/下载:35/0
  |  
提交时间:2020/12/09
Proteins
RNA
Convolution
Neural networks
Benchmark testing
Feature extraction
Sparse matrices
Convolution neural network
extreme learning machine
RNA-protein interactions
sequence
Evaluation of the secondary structures of protein in the extracellular polymeric substances extracted from activated sludge by different methods
期刊论文
JOURNAL OF ENVIRONMENTAL SCIENCES, 2019, 卷号: 80, 页码: 128-136
作者:
Xiao, Benyi
;
Liu, Yu
;
Luo, Meng
;
Yang, Tang
;
Guo, Xuesong
收藏
  |  
浏览/下载:4/0
  |  
提交时间:2020/10/22
Activated sludge
Different extraction methods
Extracellular polymeric substances
Protein secondary structure
Chemical-protein interaction extraction from biomedical literature: a hierarchical recurrent convolutional neural network method
期刊论文
INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS, 2019, 卷号: 22, 页码: 113-130
作者:
Sun, Cong
;
Yang, Zhihao
;
Wang, Lei
;
Zhang, Yin
;
Lin, Hongfei
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  |  
浏览/下载:76/0
  |  
提交时间:2019/12/02
chemical-protein interaction
data mining
relation extraction
HNN
hierarchical neural network
RCNN
recurrent convolutional neural network
Extracting chemical-protein interactions from biomedical literature via granular attention based recurrent neural networks
期刊论文
COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 2019, 卷号: 176, 页码: 61-68
作者:
Lu, Hongbin
;
Li, Lishuang
;
He, Xinyu
;
Liu, Yang
;
Zhou, Anqiao
收藏
  |  
浏览/下载:9/0
  |  
提交时间:2019/12/02
Natural language processing
Recurrent neural networks
Granular attention mechanism
Chemical-protein interactions extraction
Swish activation function
A multi-task learning based approach to biomedical entity relation extraction
会议论文
Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018
作者:
Li, Q.
;
Yang, Z.
;
Luo, L.
;
Wang, L.
;
Zhang, Y.
收藏
  |  
浏览/下载:9/0
  |  
提交时间:2019/12/02
Bioinformatics
Data mining
Drug interactions
Learning systems
Natural language processing systems
Neural networks
Proteins, Automatic extraction
Biomedical text minings
Drug-drug interactions
Entity relation extractions
Multitask learning
Protein-protein interaction extractions
Relation extraction
Shared information, Extraction
Hierarchical Recurrent Convolutional Neural Network for Chemical-protein Relation Extraction from Biomedical Literature
会议论文
Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018
作者:
Sun, C.
;
Yang, Z.
;
Wang, L.
;
Zhang, Y.
;
Lin, H.
收藏
  |  
浏览/下载:13/0
  |  
提交时间:2019/12/02
Bioinformatics
Chemical analysis
Clinical research
Convolution
Extraction
Neural networks
Proteins, Attention mechanisms
Biomedical literature
Convolutional neural network
Hierarchical RCNN
Linguistic analysis
Protein interaction
Relation extraction
State-of-the-art system, Indicators (chemical)
FKRR-MVSF: A Fuzzy Kernel Ridge Regression Model for Identifying DNA-Binding Proteins by Multi-View Sequence Features via Chou's Five-Step Rule.
期刊论文
International Journal of Molecular Sciences, 2019, 卷号: Vol.20 No.17, 页码: 4175
作者:
Zou, Yi
;
Ding, Yijie
;
Tang, Jijun
;
Guo, Fei
;
Peng, Li
收藏
  |  
浏览/下载:8/0
  |  
提交时间:2019/11/21
DNA-binding proteins prediction
feature extraction
fuzzy kernel ridge regression
multiple kernel learning
protein sequence
Enhanced microalgal protein extraction and purification using sustainable microwave-assisted multiphase partitioning technique
期刊论文
CHEMICAL ENGINEERING JOURNAL, 2019, 卷号: 367
作者:
Chew, Kit Wayne
;
Chia, Shir Reen
;
Lee, Sze Ying
;
Zhu, Liandong
;
Show, Pau Loke
收藏
  |  
浏览/下载:61/0
  |  
提交时间:2019/12/05
Extraction
Microalgae
Microwave
Protein
Three phase partitioning
DCGR: feature extractions from protein sequences based on CGR via remodeling multiple information
期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20
作者:
Mu, Zengchao
;
Yu, Ting
;
Qi, Enfeng
;
Liu, Juntao
;
Li, Guojun
收藏
  |  
浏览/下载:7/0
  |  
提交时间:2019/12/11
Protein feature extraction
CGR curve
Physicochemical property
Algorithm
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