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科研机构
大连理工大学 [1]
兰州大学 [1]
上海药物研究所 [1]
大连化学物理研究所 [1]
计算机网络信息中心 [1]
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期刊论文 [5]
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2015 [1]
2012 [2]
2008 [2]
学科主题
biochemist... [1]
物理化学 [1]
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A comparative study of trypsin specificity based on QM/MM molecular dynamics simulation and QM/MM GBSA calculation
期刊论文
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2015, 卷号: 33, 期号: 12, 页码: 2606-2618
作者:
Chen, Jianzhong
;
Wang, Jinan
;
Zhang, Qinggang
;
Chen, Kaixian
;
Zhu, Weiliang
收藏
  |  
浏览/下载:18/0
  |  
提交时间:2019/01/08
QM
MM molecular dynamics simulations
MM-GBSA method
trypsin specificity
semi-empirical Hamiltonian
binding free energies
Exploring structural and thermodynamic stabilities of human prion protein pathogenic mutants D202N, E211Q and Q217R
期刊论文
JOURNAL OF STRUCTURAL BIOLOGY, 2012, 卷号: 178, 期号: 3, 页码: 225-232
作者:
Guo, JJ
;
Ren, H
;
Ning, LL
;
Liu, HX
;
Yao, XJ
收藏
  |  
浏览/下载:4/0
  |  
提交时间:2015/12/29
Familial prion diseases
Molecular dynamics simulation
Prion protein (PrP)
D202N/E211Q/Q217R mutants
MM-GBSA method
A computational analysis of interaction mechanisms of peptide and non-peptide inhibitors with MDMX based on molecular dynamics simulation
期刊论文
computational and theoretical chemistry, 2012, 卷号: 984, 页码: 43-50
作者:
Cheng, Wei-yuan
;
Chen, Jian-zhong
;
Liang, Zhi-qiang
;
Li, Guo-hui
;
Yi, Chang-hong
收藏
  |  
浏览/下载:14/0
  |  
提交时间:2013/10/11
MD simulation
Computational alanine scanning
MM-GBSA method
p53-MDMX interaction
Cross correlation analysis
Comparative molecular dynamics simulations of histone deacetylase-like protein: binding modes and free energy analysis to hydroxamic acid inhibitors
期刊论文
Proteins-structure function and bioinformatics, 2008, 卷号: 73, 期号: 1, 页码: 134-149
作者:
Yan, Chunli
;
Xiu, Zhilong
;
Li, Xiaohui
;
Li, Shenmin
;
Hao, Ce
收藏
  |  
浏览/下载:18/0
  |  
提交时间:2019/05/09
Histone deacetylase
Histone deacetylase-like protein
Molecular dynamics simulation
Molecular mechanics-poisson-boltzmann surface area (mm-pbsa) method
Molecular mechanics generalized born surface area (mm-gbsa)
Mutagenesis
Hydroxamic acid inhibitor
Comparative molecular dynamics simulations of histone deacetylase-like protein: Binding modes and free energy analysis to hydroxamic acid inhibitors
期刊论文
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2008, 卷号: 73, 页码: 134-149
作者:
Yan, Chunli
;
Xiu, Zhilong
;
Li, Xiaohui
;
Li, Shenmin
;
Hao, Ce
收藏
  |  
浏览/下载:5/0
  |  
提交时间:2019/12/27
histone deacetylase
histone deacetylase-like protein
molecular dynamics simulation
molecular mechanics-Poisson-Boltzmann surface area (MM-PBSA) method
molecular mechanics generalized Born surface area (MM-GBSA)
mutagenesis
hydroxamic acid inhibitor
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