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BiTSC2: Bayesian inference of tumor clonal tree by joint analysis of single-cell SNV and CNA data
期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 页码: 12
作者:
Chen, Ziwei
;
Gong, Fuzhou
;
Wan, Lin
;
Ma, Liang
收藏
  |  
浏览/下载:24/0
  |  
提交时间:2022/06/21
single-cell DNA sequencing
intra-tumor heterogeneity
single nucleotide variation
copy number alteration
Bayesian modeling
cancer evolution
Circle-Seq reveals genomic and disease-specific hallmarks in urinary cell-free extrachromosomal circular DNAs
期刊论文
CLINICAL AND TRANSLATIONAL MEDICINE, 2022, 卷号: 12
作者:
Lv, Wei
;
Pan, Xiaoguang
;
Han, Peng
;
Wang, Ziyu
;
Feng, Weijia
收藏
  |  
浏览/下载:289/0
  |  
提交时间:2022/12/23
cell-free DNA
chronic kidney disease
early diagnosis
extrachromosomal circular DNA
miRNA
next generation sequencing
noninvasive biomarkers
Time Course Analysis of Genome-Wide Identification of Mutations Induced by and Genes Expressed in Response to Carbon Ion Beam Irradiation in Rice (Oryza sativa L.)
期刊论文
GENES, 2021, 卷号: 12, 期号: 9, 页码: 15
作者:
Zhang, Jian
;
Peng, Ziai
;
Liu, Qiling
收藏
  |  
浏览/下载:19/0
  |  
提交时间:2021/12/08
carbon ion beam (CIB)
whole-genome sequencing (WGS)
RNA-seq
mutation characteristics
initial DNA damage
DNA repair-related genes
DNA staining in fossil cells beyond the Quaternary: Reassessment of the evidence and prospects for an improved understanding of DNA preservation in deep time
期刊论文
EARTH-SCIENCE REVIEWS, 2021, 卷号: 216, 页码: 11
作者:
Bailleul, Alida M.
;
Li, Zhiheng
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  |  
浏览/下载:40/0
  |  
提交时间:2021/09/17
Fossil cells
Nuclei
Histochemistry
Cytochemistry
DNA staining
DNA sequencing
Genetic diversity of Horsfieldia tetratepala (Myristicaceae), an endangered Plant Species with Extremely Small Populations to China: implications for its conservation
期刊论文
PLANT SYSTEMATICS AND EVOLUTION, 2021, 卷号: 307, 期号: 4, 页码: -
作者:
Cai, Chaonan
;
Xiao, Jianhua
;
Ci, Xiuqin
;
Conran, John G.
;
Li, Jie
收藏
  |  
浏览/下载:59/0
  |  
提交时间:2021/09/08
Conservation
Horsfieldia tetratepala
Plant Species with Extremely Small Populations (PSESP)
Population genetics
Restriction site-associated DNA sequencing (RAD-seq)
Status of genetic studies and breeding ofSaccharina japonicain China
期刊论文
JOURNAL OF OCEANOLOGY AND LIMNOLOGY, 2020, 页码: 16
作者:
Wang, Xiuliang
;
Yao, Jianting
;
Zhang, Jie
;
Duan, Delin
收藏
  |  
浏览/下载:27/0
  |  
提交时间:2020/09/25
Saccaharina japonica
next generation sequencing
genomics
transcriptomics
quantitative trait locus (QTL) mapping
DNA markers
linkage map
breeding
hybridization
cytogenetics
Complementary DNA sequencing (cDNA): an effective approach for assessing the diversity and distribution of marine benthic ciliates along hydrographic gradients
期刊论文
JOURNAL OF OCEANOLOGY AND LIMNOLOGY, 2020, 页码: 15
作者:
Huang Pingping
;
Zhao Feng
;
Xu Kuidong
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  |  
浏览/下载:7/0
  |  
提交时间:2020/09/23
benthic ciliates
cDNA high-throughput sequencing
c
ommunity comparison
DNA high-throughput sequencing
morphology
Genome-Wide Discovery of Single-Nucleotide Polymorphisms and Their Application in Population Genetic Studies in the Endangered Japanese Eel (Anguilla japonica)
期刊论文
FRONTIERS IN MARINE SCIENCE, 2020, 卷号: 6, 页码: 11
作者:
Liu, Bing-Jian
;
Li, Yu-Long
;
Zhang, Bai-Dong
;
Liu, Jin-Xian
收藏
  |  
浏览/下载:26/0
  |  
提交时间:2020/03/20
population genomics
genetic diversity
restriction site-associated DNA sequencing
single-nucleotide polymorphism discovery
local adaptation
Confidence intervals for Markov chain transition probabilities based on next generation sequencing reads data
期刊论文
QUANTITATIVE BIOLOGY, 2020, 卷号: 8, 期号: 2, 页码: 143-154
作者:
Wan, Lin
;
Kang, Xin
;
Ren, Jie
;
Sun, Fengzhu
收藏
  |  
浏览/下载:22/0
  |  
提交时间:2021/01/14
DNA
FREQUENCIES
PREDICTION
Markov chains
next generation sequencing
transition probabilities
confidence intervals
Phylogeny, Taxonomy, and Biogeography of Pterocarya (Juglandaceae)
期刊论文
PLANTS-BASEL, 2020, 卷号: 9, 期号: 11, 页码: _
作者:
Song, Yi-Gang
;
Li, Ying
;
Meng, Hong-Hu
;
Fragniere, Yann
;
Ge, Bin-Jie
收藏
  |  
浏览/下载:39/0
  |  
提交时间:2020/12/31
divergence time
East Asia-southern Caucasus disjunction
Late Miocene diversification
phylogenomic relationship
refugia
restriction site-associated DNA sequencing (RAD-seq)
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