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Probe Efficient Feature Representation of Gapped K-mer Frequency Vectors from Sequences Using Deep Neural Networks
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 2, 页码: 657-667
作者:
Cao, Zhen
;
Zhang, Shihua
收藏
  |  
浏览/下载:30/0
  |  
提交时间:2020/05/24
DNA
Bioinformatics
Kernel
Feature extraction
Support vector machines
Genomics
Task analysis
Bioinformatics
machine learning
gapped k-mer
deep neural network
transcription factor binding site prediction
Confidence intervals for Markov chain transition probabilities based on next generation sequencing reads data
期刊论文
QUANTITATIVE BIOLOGY, 2020, 卷号: 8, 期号: 2, 页码: 143-154
作者:
Wan, Lin
;
Kang, Xin
;
Ren, Jie
;
Sun, Fengzhu
收藏
  |  
浏览/下载:22/0
  |  
提交时间:2021/01/14
DNA
FREQUENCIES
PREDICTION
Markov chains
next generation sequencing
transition probabilities
confidence intervals
An Improved Method for Identification of Pre-miRNA in Drosophila
期刊论文
IEEE ACCESS, 2020, 卷号: 8, 页码: 52173-52180
作者:
Yu, Tieying
;
Chen, Min
;
Wang, Chunde
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  |  
浏览/下载:73/0
  |  
提交时间:2020/07/08
MICRORNA-DISEASE ASSOCIATIONS
IDENTIFYING PROMOTERS
GENE-EXPRESSION
PREDICTION
RNA
SITES
DNA
METHYLATION
DATABASE
NETWORK
Genome-Wide DNA Methylation Profiles Reveal Common Epigenetic Patterns of Interferon-Related Genes in Multiple Autoimmune Diseases
期刊论文
FRONTIERS IN GENETICS, 2019, 卷号: 10
作者:
Chen, Sidi
;
Pu, Weilin
;
Guo, Shicheng
;
Jin, Li
;
He, Dongyi
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  |  
浏览/下载:10/0
  |  
提交时间:2019/12/05
autoimmune diseases
DNA methylation
type I interferon
biomarker
prediction
Studies of hTERT DNA methylation assays on the human age prediction
期刊论文
INTERNATIONAL JOURNAL OF LEGAL MEDICINE, 2019, 卷号: 133, 期号: 5
作者:
Xin, Ye
;
Dong, Kaikai
;
Cao, Fangqi
;
Tian, Yuxiang
;
Sun, Jing
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  |  
浏览/下载:28/0
  |  
提交时间:2019/11/26
DNA methylation
Age prediction
MSP
Real-time PCR
FKRR-MVSF: A Fuzzy Kernel Ridge Regression Model for Identifying DNA-Binding Proteins by Multi-View Sequence Features via Chou's Five-Step Rule.
期刊论文
International Journal of Molecular Sciences, 2019, 卷号: Vol.20 No.17, 页码: 4175
作者:
Zou, Yi
;
Ding, Yijie
;
Tang, Jijun
;
Guo, Fei
;
Peng, Li
收藏
  |  
浏览/下载:8/0
  |  
提交时间:2019/11/21
DNA-binding proteins prediction
feature extraction
fuzzy kernel ridge regression
multiple kernel learning
protein sequence
Towards broadening Forensic DNA Phenotyping beyond pigmentation: Improving the prediction of head hair shape from DNA
期刊论文
FORENSIC SCIENCE INTERNATIONAL-GENETICS, 2018, 卷号: 37
作者:
Pospiech, Ewelina
;
Chen, Yan
;
Kukla-Bartoszek, Magdalena
;
Breslin, Krystal
;
Aliferi, Anastasia
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  |  
浏览/下载:3/0
  |  
提交时间:2019/12/05
Head hair
Hair shape
Externally visible characteristics
DNA prediction
Forensic DNA Phenotyping
Targeted massively parallel sequencing
Evaluation of Prediction of Polymorphisms of DNA Repair Genes on the Efficacy of Platinum-Based Chemotherapy in Patients With Non-Small Cell Lung Cancer: A Network Meta-Analysis
期刊论文
JOURNAL OF CELLULAR BIOCHEMISTRY, 2017, 卷号: 118, 期号: 12
作者:
Yu, Shao-Nan
;
Liu, Gui-Feng
;
Li, Xue-Feng
;
Fu, Bao-Hong
;
Dong, Li-Xin
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  |  
浏览/下载:3/0
  |  
提交时间:2019/12/05
NON-SMALL CELL LUNG CANCER
DNA REPAIR GENE
POLYMORPHISM
PLATINUM-BASED CHEMOTHERAPY
PREDICTION
Cancer Progression Prediction Using Gene Interaction Regularized Elastic Net
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2017, 卷号: 14, 页码: 145-154
作者:
Zhang, Lin
;
Liu, Hui
;
Huang, Yufei
;
Wang, Xuesong
;
Chen, Yidong
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  |  
浏览/下载:5/0
  |  
提交时间:2019/11/26
gene-gene interaction
survival prediction
classification
protein-protein interaction
Elastic net
DNA methylation
microarray
TRANSFAC
gene expression
Inference of Markovian properties of molecular sequences from NGS data and applications to comparative genomics
期刊论文
BIOINFORMATICS, 2016, 卷号: 32, 期号: 7, 页码: 993-1000
Ren, Jie
;
Song, Kai
;
Deng, Minghua
;
Reinert, Gesine
;
Cannon, Charles H.
;
Sun, Fengzhu
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  |  
浏览/下载:40/0
  |  
提交时间:2016/06/06
DNA-SEQUENCES
STATISTICAL-INFERENCE
CHAIN ANALYSIS
ALIGNMENT
METAGENOMICS
FREQUENCIES
PREDICTION
ENHANCERS
BROWSER
WORDS
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