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昆明植物研究所 [2]
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期刊论文 [7]
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Using Parsimony-Guided Tree Proposals to Accelerate Convergence in Bayesian Phylogenetic Inference
期刊论文
SYSTEMATIC BIOLOGY, 2020, 卷号: 69, 期号: 5, 页码: 1016-1032
作者:
Zhang, Chi
;
Huelsenbeck, John P.
;
Ronquist, Fredrik
收藏
  |  
浏览/下载:8/0
  |  
提交时间:2021/09/17
Bayesian phylogenetic inference
MCMC
parsimony
tree proposal
Evolutionary distinctiveness and conservation priority of the endangered Najas ancistrocarpa (Hydrocharitaceae)
期刊论文
SYSTEMATICS AND BIODIVERSITY, 2018, 卷号: 16, 期号: 1, 页码: 45-54
作者:
Ito, Yu
;
Enju, Chigaya
;
Li, Jie
;
Tanaka, Norio
收藏
  |  
浏览/下载:29/0
  |  
提交时间:2018/03/07
Bayesian Phylogenetic Inference
Multispecies Coalescent
Species Delimitation
Dna-sequences
Mixed Models
Plants
Improvements
Systematics
Najadaceae
Bootstrap
Complete mitochondrial genomes of Triodontophorus serratus and Triodontophorus nipponicus, and their comparison with Triodontophorus brevicauda
期刊论文
Experimental Parasitology, 2017, 卷号: 181, 页码: 88-93
作者:
Gao, Jun-Feng
;
Liu, Guo-Hua
;
Duan, Hong
;
Gao, Yuan
;
Zhang, Yan
收藏
  |  
浏览/下载:25/0
  |  
提交时间:2019/12/23
Complete mitochondrial genome
Triodontophorus serratus
Triodontophorus nipponicus
Phylogenetic analyses
mt
mitochondrial
mtDNA
mitochondrial DNA
PCR
polymerase chain reaction
cox1-3
nad1-6 and nad4L, atp6, rrnS and rrnL, and cytb, genes encoding cytochrome c oxidase subunits I-III, NADH dehydrogenase subunits 1–6 and 4L, ATPase subunits 6, small and large subunits ribosomal RNA, and cytochrome oxidase b
rRNA
ribosomal RNA
tRNA
transfer RNA
LNCR
the long non-coding region
SNCR
the short non-coding region
rDNA ITS
the internal transcribed spacers of nuclear ribosomal DNA
PCGs
protein-coding genes
MP
maximum parsimony
BI
Bayesian inference
ML
Maximum Likelihood
Comparative analyses of the complete mitochondrial genomes of the two ruminant hookworms Bunostomum trigonocephalum and Bunostomum phlebotomum
期刊论文
Gene, 2014, 卷号: 541, 期号: 2, 页码: 92-100
作者:
Gao, Jun-Feng
;
Zhao, Quan
;
Liu, Guo-Hua
;
Zhang, Yan
;
Zhang, Ying
收藏
  |  
浏览/下载:4/0
  |  
提交时间:2019/12/23
mt
mitochondrial
mtDNA
mitochondrial DNA
PCR
polymerase chain reaction
cox1-3, nad1-6 and nad4L, atp6 and atp8, rrnS and rrnL, and cytb
genes encoding cytochrome coxidase subunits I and III, NADH dehydrogenase subunits 1–6 and 4L, ATPase subunits 6 and 8, Small and large subunit ribosomal RNA, and cytochrome oxidase b
ITS rDNA
the internal transcribed spacers of nuclear ribosomal DNA
MP
maximum parsimony
NJ
neighbor joining
BI
Bayesian inference
BP
bootstrap probability
PP
posterior probabilities
Bunostomum trigonocephalum
Bunostomum phlebotomum
Complete mitochondrial genome
Mitochondrial DNA
Phylogenetic analysis
Comparative Chloroplast Genomes of Camellia Species
期刊论文
PLOS ONE, 2013, 卷号: 8, 期号: 8
作者:
Yang, Jun-Bo
;
Yang, Shi-Xiong
;
Li, Hong-Tao
;
Yang, Jing
;
Li, De-Zhu
收藏
  |  
浏览/下载:31/0
  |  
提交时间:2013/11/12
BAYESIAN PHYLOGENETIC INFERENCE
MULTIPLE SEQUENCE ALIGNMENT
PLASTID GENOMES
INVERTED REPEAT
STRUCTURAL ORGANIZATION
NICOTIANA-TABACUM
VASCULAR PLANTS
HIGH-THROUGHPUT
DNA
THEACEAE
Basal Jawed Vertebrate Phylogenomics Using Transcriptomic Data from Solexa Sequencing
期刊论文
PLOS ONE, 2012, 卷号: 7, 期号: 4, 页码: e36256
作者:
Chen, Ming
;
Zou, Ming
;
Yang, Lei
;
He, Shunping
收藏
  |  
浏览/下载:20/0
  |  
提交时间:2012/09/25
BAYESIAN PHYLOGENETIC INFERENCE
MITOCHONDRIAL-DNA
CARTILAGINOUS FISHES
MAXIMUM-LIKELIHOOD
DIVERGENCE TIMES
EST SEQUENCES
MIXED MODELS
MONTE-CARLO
ALIGNMENTS
EVOLUTION
Tail Paradox, Partial Identifiability, and Influential Priors in Bayesian Branch Length Inference
其他
2012-01-01
Rannala, Bruce
;
Zhu, Tianqi
;
Yang, Ziheng
收藏
  |  
浏览/下载:3/0
  |  
提交时间:2015/11/16
Bayesian phylogenetics
Markov chain Monte Carlo
branch lengths
identifiability
tail paradox
compound dirichlet distribution
PHYLOGENETIC INFERENCE
METROPOLIS ALGORITHMS
TREES
CONVERGENCE
DIVERGENCE
SEQUENCES
HASTINGS
MODELS
RATES
TIMES
Molecular systematics and character evolution of Typha (Typhaceae) inferred from nuclear and plastid DNA sequence data
期刊论文
TAXON, 2011, 卷号: 60, 期号: 5, 页码: 1417-1428
Kim, C
;
Choi, HK
收藏
  |  
浏览/下载:27/0
  |  
提交时间:2012/04/10
LEAFY
plastid DNA
phylogenetic relationship
species delimitation
BAYESIAN PHYLOGENETIC INFERENCE
CHLOROPLAST DNA
NORTH-AMERICA
ANGUSTIFOLIA
LATIFOLIA
INCONGRUENCE
POPULATIONS
POACEAE
POLLEN
GENES
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