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HINGRL: predicting drug-disease associations with graph representation learning on heterogeneous information networks
期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 卷号: 23, 期号: 1, 页码: 1-15
作者:
Zhao, BW (Zhao, Bo-Wei) [1] , [2]
;
Hu, L (Hu, Lun) [2]
;
You, ZH (You, Zhu-Hong) [3] , [4]
;
Wang, L (Wang, Lei) [5]
;
Su, XR (Su, Xiao-Rui) [1] , [2]
收藏
  |  
浏览/下载:26/0
  |  
提交时间:2022/05/06
drug-disease associations
prediction
heterogeneous information network
graph representation learning
drug repositioning
Graph representation learning in bioinformatics: trends, methods and applications
期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 卷号: 23, 期号: 1, 页码: 1-16
作者:
Yi, HC (Yi, Hai-Cheng) [1] , [2]
;
You, ZH (You, Zhu-Hong) [3]
;
Huang, DS (Huang, De-Shuang) [4]
;
Kwoh, CK (Kwoh, Chee Keong) [5] , [6]
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  |  
浏览/下载:18/0
  |  
提交时间:2022/05/06
graph representation learning
deeplearning
graph neural network
graph embedding
knowledge graph
healthcare
MGRL: Predicting Drug-Disease Associations Based on Multi-Graph Representation Learning
期刊论文
FRONTIERS IN GENETICS, 2021, 卷号: 12, 期号: 4, 页码: 1-8
作者:
Zhao, BW (Zhao, Bo-Wei)[ 1,2,3 ]
;
You, ZH (You, Zhu-Hong)[ 1,2,3 ]
;
Wong, L (Wong, Leon)[ 1,2,3 ]
;
Zhang, P (Zhang, Ping)[ 4 ]
;
Li, HY (Li, Hao-Yuan)[ 5 ]
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  |  
浏览/下载:40/0
  |  
提交时间:2021/05/06
drug
disease
drug repositioning
multi-graph representation learning
graph embedding
MeSHHeading2vec: a new method for representing MeSH headings as vectors based on graph embedding algorithm
期刊论文
BRIEFINGS IN BIOINFORMATICS, 2021, 卷号: 22, 期号: 2, 页码: 2085-2095
作者:
Guo,ZH (Guo, Zhen-Hao) 1
;
You,ZH (You,Zhu-Hong) 1, 2
;
Huang,DS (Huang, De-Shuang) 3, 4
;
Yi, HC (Yi, Hai-Cheng) 2
;
Zheng, K (Zheng, Kai) 5
收藏
  |  
浏览/下载:144/0
  |  
提交时间:2021/08/09
MeSHHeading2vecMeSH relationship networkgraph embeddingcomputational prediction model
Learning from low-rank multimodal representations for predicting disease-drug associations
期刊论文
BMC MEDICAL INFORMATICS AND DECISION MAKING, 2021, 卷号: 21, 期号: SUPPL1, 页码: 1-12
作者:
Hu, PW (Hu, Pengwei) [1]
;
Huang, YA (Huang, Yu-An) [2]
;
Mei, J (Mei, Jing) [3]
;
Leung, H (Leung, Henry) [4]
;
Chen, ZH (Chen, Zhan-Heng) [1]
收藏
  |  
浏览/下载:15/0
  |  
提交时间:2022/03/24
Disease-drug associations predictionLow-rank tensorsMultimodal fusion
GCNCDA: A new method for predicting circRNA-disease associations based on Graph Convolutional Network Algorithm
期刊论文
PLOS COMPUTATIONAL BIOLOGY, 2020, 卷号: 16, 期号: 5, 页码: 1-19
作者:
Wang, L (Wang, Lei)[ 1,2 ]
;
You, ZH (You, Zhu-Hong)[ 2 ]
;
Li, YM (Li, Yang-Ming)[ 3 ]
;
Zheng, K (Zheng, Kai)[ 4 ]
;
Huang, YA (Huang, Yu-An)[ 5 ]
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  |  
浏览/下载:31/0
  |  
提交时间:2020/07/06
iCDA-CGR: Identification of circRNA-disease associations based on Chaos Game Representation
期刊论文
PLOS COMPUTATIONAL BIOLOGY, 2020, 卷号: 16, 期号: 5, 页码: 1-22
作者:
Zheng, K (Zheng, Kai)[ 1 ]
;
You, ZH (You, Zhu-Hong)[ 2 ]
;
Li, JQ (Li, Jian-Qiang)[ 3 ]
;
Wang, L (Wang, Lei)[ 2,4 ]
;
Guo, ZH (Guo, Zhen-Hao)[ 2 ]
收藏
  |  
浏览/下载:38/0
  |  
提交时间:2020/07/06
Learning Representations to Predict Intermolecular Interactions on Large-Scale Heterogeneous Molecular Association Network
期刊论文
ISCIENCE, 2020, 卷号: 23, 期号: 7, 页码: 1-16
作者:
Yi, HC (Yi, Hai-Cheng)[ 1,2 ]
;
You, ZH (You, Zhu-Hong)[ 1,2 ]
;
Huang, DS (Huang, De-Shuang)[ 3 ]
;
Guo, ZH (Guo, Zhen-Hao)[ 1 ]
;
Chan, KCC (Chan, Keith C. C.)[ 4 ]
收藏
  |  
浏览/下载:29/0
  |  
提交时间:2020/09/09
Combining High Speed ELM Learning with a Deep Convolutional Neural Network Feature Encoding for Predicting Protein-RNA Interactions
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 3, 页码: 972-980
作者:
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浏览/下载:34/0
  |  
提交时间:2020/12/09
Proteins
RNA
Convolution
Neural networks
Benchmark testing
Feature extraction
Sparse matrices
Convolution neural network
extreme learning machine
RNA-protein interactions
sequence
NLPEI: A Novel Self-Interacting Protein Prediction Model Based on Natural Language Processing and Evolutionary Information
期刊论文
EVOLUTIONARY BIOINFORMATICS, 2020, 卷号: 16, 期号: 12, 页码: 1-12
作者:
Jia, LN (Jia, Li-Na)[ 1 ]
;
Yan, X (Yan, Xin)[ 2,3 ]
;
You, ZH (You, Zhu-Hong)[ 4 ]
;
Zhou, X (Zhou, Xi)[ 4 ]
;
Li, LP (Li, Li-Ping)[ 4 ]
收藏
  |  
浏览/下载:34/0
  |  
提交时间:2021/03/19
Self-interacting protein
natural language processing
evolutionary information
stacked auto-encoder
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