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科研机构
西安交通大学 [60]
兰州大学 [1]
内容类型
期刊论文 [34]
会议论文 [27]
发表日期
2019 [1]
2018 [7]
2017 [11]
2016 [3]
2015 [2]
2014 [4]
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A graph-based algorithm for estimating clonal haplotypes of tumor sample from sequencing data.
期刊论文
BMC medical genomics, 2019, 卷号: 12, 页码: 27
作者:
Wang Yixuan
;
Zhang Xuanping
;
Ding Shuai
;
Geng Yu
;
Liu Jianye
收藏
  |  
浏览/下载:14/0
  |  
提交时间:2019/11/19
Clonal haplotype
Sequencing data analysis
Computational pipeline
Cancer genomics
Haplotype phasing
A computational method for detecting the associations between multiple loci and phenotypes
会议论文
作者:
Zhao, Zhongmeng
;
Huang, Jiali
;
Xu, Mingzhe
;
Liu, Ruoyu
;
He, Siyu
收藏
  |  
浏览/下载:11/0
  |  
提交时间:2019/11/19
disease association study
computational method
swarm optimization
multiple-loci-multiple-phenotype problem
Correcting genomic deletion calls with complex boundaries from next generation sequencing data
会议论文
作者:
Zhao, Zhongmeng
;
Tian, Zewen
;
Geng, Yu
;
He, Siyu
;
Zhang, Xuanping
收藏
  |  
浏览/下载:22/0
  |  
提交时间:2019/11/19
next generation sequencing data analysis
tumor clonity
structural variant detection
genomic deletion with complex boundaries
Cancer genomics
TNSim: A Tumor Sequencing Data Simulator for Incorporating Clonality Information
会议论文
作者:
Geng, Yu
;
Zhao, Zhongmeng
;
Xu, Mingzhe
;
Zhang, Xuanping
;
Xiao, Xiao
收藏
  |  
浏览/下载:17/0
  |  
提交时间:2019/11/19
Cancer genomics
Cancer sequencing data
Clonal structure
Data simulators
Effective analysis
Next-generation sequencing
Single nucleotides
Statistical features
Estimating the length distributions of genomic micro-satellites from next generation sequencing data
会议论文
作者:
Feng, Xuan
;
Hu, Huan
;
Zhao, Zhongmeng
;
Zhang, Xuanping
;
Wang, Jiayin
收藏
  |  
浏览/下载:4/0
  |  
提交时间:2019/11/19
Estimation approaches
Expectation-maximization algorithms
Length distributions
Micro satellite
Next-generation sequencing
Potential researches
Probabilistic approaches
State-of-the-art approach
An Efficient Algorithm for Sensitively Detecting Circular RNA from RNA-seq Data.
期刊论文
International journal of molecular sciences, 2018, 卷号: 19
作者:
Zhang Xuanping
;
Wang Yidan
;
Zhao Zhongmeng
;
Wang Jiayin
收藏
  |  
浏览/下载:4/0
  |  
提交时间:2019/11/26
local similar sequence
de novo detection
RNA-seq
high sensitivity
CIGenotyper: A machine learning approach for genotyping complex indel calls
会议论文
作者:
Zheng, Tian
;
Li, Yang
;
Geng, Yu
;
Zhao, Zhongmeng
;
Zhang, Xuanping
收藏
  |  
浏览/下载:11/0
  |  
提交时间:2019/11/26
Complex indel
Computational problem
Genomic structural variant
Genotyping
Machine learning approaches
Relevance Vector Machine
State-of-the-art approach
Structural variations
Synstable Fusion: A Network-Based Algorithm for Estimating Driver Genes in Fusion Structures
期刊论文
MOLECULES, 2018, 卷号: 23
作者:
Xu, Mingzhe
;
Zhao, Zhongmeng
;
Zhang, Xuanping
;
Gao, Aiqing
;
Wu, Shuyan
收藏
  |  
浏览/下载:5/0
  |  
提交时间:2019/11/26
gene susceptibility prioritization
evaluating driver partner
gene networks
gene fusion data
An Efficient Algorithm for Identifying Genomic Structural Inversion with Wide-spectrum of Length
会议论文
作者:
Geng, Yu
;
Zhao, Zhongmeng
;
Cui, Xingjian
;
Zhang, Rong
;
Zheng, Tian
收藏
  |  
浏览/下载:1/0
  |  
提交时间:2019/11/26
genomic structural variation
genomic inversion
the next generation sequencing data
short-to-medium length
detection algorithm
Detecting haplotype amplification in cancer sequencing data
会议论文
作者:
Liu, Weiwei
;
Gao, Jingyang
;
Zhao, Zhongmeng
;
Yang, Rongrong
;
Geng, Yu
收藏
  |  
浏览/下载:14/0
  |  
提交时间:2019/11/26
Allelic frequency
Amplification detections
Clonal expansion
Computational approach
Hidden markov
Hidden state
Linkage disequilibrium
Posterior likelihood
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