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HINGRL: predicting drug-disease associations with graph representation learning on heterogeneous information networks
期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 卷号: 23, 期号: 1, 页码: 1-15
作者:
Zhao, BW (Zhao, Bo-Wei) [1] , [2]
;
Hu, L (Hu, Lun) [2]
;
You, ZH (You, Zhu-Hong) [3] , [4]
;
Wang, L (Wang, Lei) [5]
;
Su, XR (Su, Xiao-Rui) [1] , [2]
收藏
  |  
浏览/下载:26/0
  |  
提交时间:2022/05/06
drug-disease associations
prediction
heterogeneous information network
graph representation learning
drug repositioning
Graph representation learning in bioinformatics: trends, methods and applications
期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 卷号: 23, 期号: 1, 页码: 1-16
作者:
Yi, HC (Yi, Hai-Cheng) [1] , [2]
;
You, ZH (You, Zhu-Hong) [3]
;
Huang, DS (Huang, De-Shuang) [4]
;
Kwoh, CK (Kwoh, Chee Keong) [5] , [6]
收藏
  |  
浏览/下载:18/0
  |  
提交时间:2022/05/06
graph representation learning
deeplearning
graph neural network
graph embedding
knowledge graph
healthcare
MGRL: Predicting Drug-Disease Associations Based on Multi-Graph Representation Learning
期刊论文
FRONTIERS IN GENETICS, 2021, 卷号: 12, 期号: 4, 页码: 1-8
作者:
Zhao, BW (Zhao, Bo-Wei)[ 1,2,3 ]
;
You, ZH (You, Zhu-Hong)[ 1,2,3 ]
;
Wong, L (Wong, Leon)[ 1,2,3 ]
;
Zhang, P (Zhang, Ping)[ 4 ]
;
Li, HY (Li, Hao-Yuan)[ 5 ]
收藏
  |  
浏览/下载:40/0
  |  
提交时间:2021/05/06
drug
disease
drug repositioning
multi-graph representation learning
graph embedding
Prediction of lncRNA-disease associations via an embedding learning HOPE in heterogeneous information networks
期刊论文
MOLECULAR THERAPY-NUCLEIC ACIDS, 2021, 卷号: 23, 期号: 3, 页码: 277-285
作者:
Zhou, JR (Zhou, Ji-Ren)[ 1 ]
;
You, ZH (You, Zhu-Hong)[ 1 ]
;
Cheng, L (Cheng, Li)[ 1 ]
;
Ji, BY (Ji, Bo-Ya)[ 1,2 ]
收藏
  |  
浏览/下载:28/0
  |  
提交时间:2021/05/06
An Efficient Computational Model for Large-Scale Prediction of Protein-Protein Interactions Based on Accurate and Scalable Graph Embedding
期刊论文
FRONTIERS IN GENETICS, 2021, 卷号: 12, 期号: 2, 页码: 1-10
作者:
Su, XR (Su, Xiao-Rui)[ 1,2,3 ]
;
You, ZH (You, Zhu-Hong)[ 1,2,3 ]
;
Hu, L (Hu, Lun)[ 1,2,3 ]
;
Huang, YA (Huang, Yu-An)[ 1 ]
;
Wang, Y (Wang, Yi)[ 1,2,3 ]
收藏
  |  
浏览/下载:33/0
  |  
提交时间:2021/05/24
large-scale
protein-protein interaction
GraphZoom
weighted graph
graph embedding
In silico drug repositioning using deep learning and comprehensive similarity measures
期刊论文
BMC BIOINFORMATICS, 2021, 卷号: 22, 期号: 增刊3, 页码: 1-14
作者:
Yi, HC (Yi, Hai-Cheng) 1 , 2
;
You, ZH (You, Zhu-Hong) 1
;
Wang, L (Wang, Lei) 1
;
Su, XR (Su, Xiao-Rui) 1 , 2
;
Zhou, X (Zhou, Xi) 1
收藏
  |  
浏览/下载:39/0
  |  
提交时间:2021/07/14
Drug repositioningDrug-disease interactionGated recurrent unitsGaussian interaction profile kernelMachine learning
LDGRNMF: LncRNA-disease associations prediction based on graph regularized non-negative matrix factorization
期刊论文
NEUROCOMPUTING, 2021, 卷号: 424, 期号: 2, 页码: 236-245
作者:
Wang, MN (Wang, Mei-Neng)[ 1 ]
;
You, ZH (You, Zhu-Hong)[ 2 ]
;
Wang, L (Wang, Lei)[ 2,3 ]
;
Li, LP (Li, Li-Ping)[ 2 ]
;
Zheng, K (Zheng, Kai)[ 4 ]
收藏
  |  
浏览/下载:60/0
  |  
提交时间:2021/03/05
LncRNA-disease associations
LncRNA-disease similarity
Nonnegative matrix factorization
Graph regularization
MeSHHeading2vec: a new method for representing MeSH headings as vectors based on graph embedding algorithm
期刊论文
BRIEFINGS IN BIOINFORMATICS, 2021, 卷号: 22, 期号: 2, 页码: 2085-2095
作者:
Guo,ZH (Guo, Zhen-Hao) 1
;
You,ZH (You,Zhu-Hong) 1, 2
;
Huang,DS (Huang, De-Shuang) 3, 4
;
Yi, HC (Yi, Hai-Cheng) 2
;
Zheng, K (Zheng, Kai) 5
收藏
  |  
浏览/下载:144/0
  |  
提交时间:2021/08/09
MeSHHeading2vecMeSH relationship networkgraph embeddingcomputational prediction model
HiSCF: leveraging higher-order structures for clustering analysis in biological networks
期刊论文
BIOINFORMATICS, 2021, 卷号: 37, 期号: 4, 页码: 542-550
作者:
Hu, L (Hu, Lun) 1 , 2
;
Zhang, J (Zhang, Jun) 2
;
Pan, XY (Pan, Xiangyu) 2
;
Yan, H (Yan, Hong) 3
;
You, ZH (You, Zhu-Hong) 1
收藏
  |  
浏览/下载:17/0
  |  
提交时间:2021/09/22
Learning from low-rank multimodal representations for predicting disease-drug associations
期刊论文
BMC MEDICAL INFORMATICS AND DECISION MAKING, 2021, 卷号: 21, 期号: SUPPL1, 页码: 1-12
作者:
Hu, PW (Hu, Pengwei) [1]
;
Huang, YA (Huang, Yu-An) [2]
;
Mei, J (Mei, Jing) [3]
;
Leung, H (Leung, Henry) [4]
;
Chen, ZH (Chen, Zhan-Heng) [1]
收藏
  |  
浏览/下载:16/0
  |  
提交时间:2022/03/24
Disease-drug associations predictionLow-rank tensorsMultimodal fusion
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