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A deep learning method for repurposing antiviral drugs against new viruses via multi-view nonnegative matrix factorization and its application to SARS-CoV-2
期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 卷号: 23, 期号: 1, 页码: 1-16
作者:
Su, XR (Su, Xiaorui) [1]
;
Hu, L (Hu, Lun) [1]
;
You, ZH (You, Zhuhong) [2]
;
Hu, PW (Hu, Pengwei) [1]
;
Wang, L (Wang, Lei) [3]
收藏
  |  
浏览/下载:23/0
  |  
提交时间:2022/05/06
SARS-CoV-2
drugrepositioning
constrained multi-view nonnegative matrix factorization
deeplearning
graphconvolutionalnetwork
HINGRL: predicting drug-disease associations with graph representation learning on heterogeneous information networks
期刊论文
BRIEFINGS IN BIOINFORMATICS, 2022, 卷号: 23, 期号: 1, 页码: 1-15
作者:
Zhao, BW (Zhao, Bo-Wei) [1] , [2]
;
Hu, L (Hu, Lun) [2]
;
You, ZH (You, Zhu-Hong) [3] , [4]
;
Wang, L (Wang, Lei) [5]
;
Su, XR (Su, Xiao-Rui) [1] , [2]
收藏
  |  
浏览/下载:26/0
  |  
提交时间:2022/05/06
drug-disease associations
prediction
heterogeneous information network
graph representation learning
drug repositioning
Prediction of Novel van der Waals Boron Oxides with Superior Deep-Ultraviolet Nonlinear Optical Performance
期刊论文
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2021, 卷号: 60, 期号: 19, 页码: 10791-10797
作者:
Li, H (Li, Hao)[ 1,2,3 ]
;
Min, JM (Min, Jingmei)[ 1 ]
;
Yang, ZH (Yang, Zhihua)[ 1,2 ]
;
Wang, ZH (Wang, Zhenhai)[ 3,4 ]
;
Pan, SL (Pan, Shilie)[ 1,2 ]
收藏
  |  
浏览/下载:86/0
  |  
提交时间:2021/05/06
boron oxides
crystal structure prediction
deep-ultraviolet nonlinear optical material
theoretical calculations
van der Waals
MGRL: Predicting Drug-Disease Associations Based on Multi-Graph Representation Learning
期刊论文
FRONTIERS IN GENETICS, 2021, 卷号: 12, 期号: 4, 页码: 1-8
作者:
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  |  
浏览/下载:39/0
  |  
提交时间:2021/05/06
drug
disease
drug repositioning
multi-graph representation learning
graph embedding
An Efficient Computational Model for Large-Scale Prediction of Protein-Protein Interactions Based on Accurate and Scalable Graph Embedding
期刊论文
FRONTIERS IN GENETICS, 2021, 卷号: 12, 期号: 2, 页码: 1-10
作者:
Su, XR (Su, Xiao-Rui)[ 1,2,3 ]
;
You, ZH (You, Zhu-Hong)[ 1,2,3 ]
;
Hu, L (Hu, Lun)[ 1,2,3 ]
;
Huang, YA (Huang, Yu-An)[ 1 ]
;
Wang, Y (Wang, Yi)[ 1,2,3 ]
收藏
  |  
浏览/下载:33/0
  |  
提交时间:2021/05/24
large-scale
protein-protein interaction
GraphZoom
weighted graph
graph embedding
In silico drug repositioning using deep learning and comprehensive similarity measures
期刊论文
BMC BIOINFORMATICS, 2021, 卷号: 22, 期号: 增刊3, 页码: 1-14
作者:
Yi, HC (Yi, Hai-Cheng) 1 , 2
;
You, ZH (You, Zhu-Hong) 1
;
Wang, L (Wang, Lei) 1
;
Su, XR (Su, Xiao-Rui) 1 , 2
;
Zhou, X (Zhou, Xi) 1
收藏
  |  
浏览/下载:38/0
  |  
提交时间:2021/07/14
Drug repositioningDrug-disease interactionGated recurrent unitsGaussian interaction profile kernelMachine learning
LDGRNMF: LncRNA-disease associations prediction based on graph regularized non-negative matrix factorization
期刊论文
NEUROCOMPUTING, 2021, 卷号: 424, 期号: 2, 页码: 236-245
作者:
Wang, MN (Wang, Mei-Neng)[ 1 ]
;
You, ZH (You, Zhu-Hong)[ 2 ]
;
Wang, L (Wang, Lei)[ 2,3 ]
;
Li, LP (Li, Li-Ping)[ 2 ]
;
Zheng, K (Zheng, Kai)[ 4 ]
收藏
  |  
浏览/下载:58/0
  |  
提交时间:2021/03/05
LncRNA-disease associations
LncRNA-disease similarity
Nonnegative matrix factorization
Graph regularization
MeSHHeading2vec: a new method for representing MeSH headings as vectors based on graph embedding algorithm
期刊论文
BRIEFINGS IN BIOINFORMATICS, 2021, 卷号: 22, 期号: 2, 页码: 2085-2095
作者:
Guo,ZH (Guo, Zhen-Hao) 1
;
You,ZH (You,Zhu-Hong) 1, 2
;
Huang,DS (Huang, De-Shuang) 3, 4
;
Yi, HC (Yi, Hai-Cheng) 2
;
Zheng, K (Zheng, Kai) 5
收藏
  |  
浏览/下载:139/0
  |  
提交时间:2021/08/09
MeSHHeading2vecMeSH relationship networkgraph embeddingcomputational prediction model
Hg3P2S8: A New Promising Infrared Nonlinear Optical Material with a Large Second-Harmonic Generation and a High Laser-Induced Damage Threshold
期刊论文
CHEMISTRY OF MATERIALS, 2021, 卷号: 33, 期号: 16, 页码: 6514-6521
作者:
Chu, Y (Chu, Yu) 1 , 2
;
Wang, P (Wang, Peng) 1
;
Zeng, H (Zeng, Hao) 1
;
Cheng, SC (Cheng, Shichao) 1
;
Su, X (Su, Xin) 1
收藏
  |  
浏览/下载:62/0
  |  
提交时间:2021/09/22
A Novel Method to Predict Drug-Target Interactions Based on Large-Scale Graph Representation Learning
期刊论文
CANCERS, 2021, 卷号: 13, 期号: 9, 页码: 1-12
作者:
Zhao, BW (Zhao, Bo-Wei) 1 , 2 , 3
;
You, ZH (You, Zhu-Hong) 1 , 2 , 3
;
Hu, L (Hu, Lun) 1 , 2 , 3
;
Guo, ZH (Guo, Zhen-Hao) 1 , 2 , 3
;
Wang, L (Wang, Lei) 1 , 2 , 3
收藏
  |  
浏览/下载:36/0
  |  
提交时间:2021/07/27
drug discoverydrug-target interactionslarge-scale graph representation learningcomputational method
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