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Seq-SetNet: directly exploiting multiple sequence alignment for protein secondary structure prediction
期刊论文
BIOINFORMATICS, 2022, 卷号: 38, 期号: 4, 页码: 990-996
作者:
Ju, Fusong
;
Zhu, Jianwei
;
Zhang, Qi
;
Wei, Guozheng
;
Sun, Shiwei
收藏
  |  
浏览/下载:24/0
  |  
提交时间:2023/01/16
RECOGNITION
FRAGMENTS
FOLD
Predicting the aptamer SYL3C-EpCAM complex's structure with the Martini-based simulation protocol
期刊论文
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2021, 卷号: 23, 期号: 12, 页码: 7066-7079
作者:
Shang, Xu
;
Guan, Zhen
;
Zhang, Shuai
;
Shi, Lulin
;
You, Haihang
收藏
  |  
浏览/下载:13/0
  |  
提交时间:2021/12/01
ISSEC: inferring contacts among protein secondary structure elements using deep object detection
期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 期号: 1, 页码: 13
作者:
Zhang, Qi
;
Zhu, Jianwei
;
Ju, Fusong
;
Kong, Lupeng
;
Sun, Shiwei
收藏
  |  
浏览/下载:46/0
  |  
提交时间:2021/12/01
Protein structure
Secondary structure elements
Inter-SSE contacts
Accurate inference of the full base-pairing structure of RNA by deep mutational scanning and covariation-induced deviation of activity
期刊论文
NUCLEIC ACIDS RESEARCH, 2020, 卷号: 48
作者:
Zhang, Zhe
;
Xiong, Peng
;
Zhang, Tongchuan
;
Wang, Junfeng
;
Zhan, Jian
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  |  
浏览/下载:24/0
  |  
提交时间:2020/11/26
ISSEC: inferring contacts among protein secondary structure elements using deep object detection
期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 期号: 1, 页码: 503
作者:
Zhang, Qi
;
Zhu, Jianwei
;
Ju, Fusong
;
Kong, Lupeng
;
Sun, Shiwei
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  |  
浏览/下载:51/0
  |  
提交时间:2021/09/27
HELIX-HELIX INTERACTIONS
INVERSE COVARIANCE ESTIMATION
RESIDUE CONTACTS
BETA-SHEETS
PREDICTION
MEMBRANE
Spectroscopic study of conformation changes of bovine serum albumin in aqueous environment
期刊论文
CHINESE CHEMICAL LETTERS, 2019, 卷号: 30, 期号: 6, 页码: 1302-1306
作者:
Guo, Chune
;
Guo, Xiaomi
;
Chu, Wubo
;
Jiang, Nan
;
Li, He
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  |  
浏览/下载:78/0
  |  
提交时间:2019/12/18
SECONDARY STRUCTURE PREDICTION
PROTEIN CONFORMATIONS
INFRARED SPECTRA
BINDING
IDENTIFICATION
STABILITY
Comparing NMR and X-ray protein structure: Lindemann-like parameters and NMR disorder
期刊论文
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2018, 卷号: 36, 期号: 9, 页码: 2331-2341
作者:
Sussman, JL
;
Faraggi, E
;
Dunker, AK
;
Kloczkowski, A
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  |  
浏览/下载:90/0
  |  
提交时间:2018/12/27
BACKBONE TORSION ANGLES
MAJOR URINARY PROTEIN
INTRINSIC DISORDER
STRUCTURE PREDICTION
SECONDARY STRUCTURE
CRYSTAL-STRUCTURE
DYNAMICS
DIFFRACTION
CRYSTALLOGRAPHY
RECOGNITION
Protein secondary structure prediction improved by recurrent neural networks integrated with two-dimensional convolutional neural networks
期刊论文
JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 2018, 卷号: 16, 期号: 5
作者:
Guo, Yanbu
;
Wang, Bingyi
;
Li, Weihua
;
Yang, Bei
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  |  
浏览/下载:4/0
  |  
提交时间:2019/12/04
Bioinformatics
protein secondary structure predication (PSSP)
convolutional neural networks (CNNs)
recurrent neural networks (RNNs)
long short-term memory (LSTM)
gated recurrent units (GRUs)
Sequential search leads to faster, more efficient fragment-based de novo protein structure prediction
期刊论文
BIOINFORMATICS, 2018, 卷号: 34, 期号: 7, 页码: 1132-1140
作者:
de Oliveira, SHP
;
Law, EC
;
Shi, JY
;
Deane, CM
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  |  
浏览/下载:27/0
  |  
提交时间:2018/09/06
Secondary Structure Prediction
Coevolution Methods
Database
Stepwise
Contact
Rosetta
Server
Algorithm
Quality
Model
The first report of diablo in Megalobrama amblycephala: characterization, phylogenetic analysis, functional annotation and expression
期刊论文
JOURNAL OF GENETICS, 2017, 卷号: 96, 期号: 4, 页码: 613-623
作者:
Ngoc Tuan Tran
;
Jakovlic, Ivan
;
Wang, Wei-Min
收藏
  |  
浏览/下载:14/0
  |  
提交时间:2019/08/01
Diablo
physicochemical characterization
homology modelling
functional annotation
gene expression
Megalobrama amblycephala
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