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DMfold: A Novel Method to Predict RNA Secondary Structure With Pseudoknots Based on Deep Learning and Improved Base Pair Maximization Principle
期刊论文
FRONTIERS IN GENETICS, 2019, 卷号: 10
作者:
Li, Cong
;
Wang, Linyu
;
Liu, Yuanning
;
Zhong, Xiaodan
;
Liu, Haiming
收藏
  |  
浏览/下载:18/0
  |  
提交时间:2019/12/05
RNA
secondary structure prediction
pseudoknot
deep learning
multi-sequence method
single-sequence method
improved base pair maximization principle
Combining stochastic grammar and semi-supervised learning techniques to extract RNA structures with pseudoknots
期刊论文
International Journal of Performability Engineering, 2019, 卷号: 15, 期号: 7, 页码: 1939-1946
作者:
Tang, S.*
收藏
  |  
浏览/下载:3/0
  |  
提交时间:2019/12/24
Performance improvement
Prediction accuracy
RNA structures
Semi-supervised learning
Predicting 3D structure and stability of RNA pseudoknots in monovalent and divalent ion solutions
期刊论文
PLOS COMPUTATIONAL BIOLOGY, 2018, 卷号: 14, 期号: 6
作者:
Shi, Ya-Zhou
;
Jin, Lei
;
Feng, Chen-Jie
;
Tan, Ya-Lan
;
Tan, Zhi-Jie
收藏
  |  
浏览/下载:2/0
  |  
提交时间:2019/12/05
Predicting Model and Algorithm in RNA Folding Structure Including Pseudoknots
期刊论文
INTERNATIONAL JOURNAL OF PATTERN RECOGNITION AND ARTIFICIAL INTELLIGENCE, 2018, 卷号: 32, 期号: 10
作者:
Liu, Zhendong
;
Zhu, Daming
;
Dai, Qionghai
收藏
  |  
浏览/下载:2/0
  |  
提交时间:2019/12/11
RNA folding structure
algorithm
PTAS
pseudoknots
BHG
Predicting scheme of RNA folding structure including pseudoknots
期刊论文
International Journal of Sensor Networks, 2015, 卷号: 16, 期号: 4, 页码: 229-235
作者:
Liu Z.
;
Zhu D.
;
Hongwei M.
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  |  
浏览/下载:4/0
  |  
提交时间:2019/12/17
Approximation algorithm
Polynomial time approximation scheme
Pseudoknots
RNA structure
Stem
Predicting scheme of RNA folding structure including pseudoknots
期刊论文
International Journal of Sensor Networks, 2014, 卷号: 16, 期号: 4, 页码: 229-235
作者:
Liu, Zhendong
;
Zhu, Daming
;
Ma, Hongwei
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  |  
浏览/下载:7/0
  |  
提交时间:2019/12/17
RNA structure
pseudoknots
stem
approximation algorithm
polynomial time approximation scheme
An approximation scheme for RNA folding structure prediction including pseudoknots
期刊论文
Proceedings - 9th International Conference on Computational Intelligence and Security, CIS 2013, 2013, 页码: 6-10
作者:
Liu, Zhendong
;
Zhu, Daming
;
Cui, Wei
;
Liu, Nan
收藏
  |  
浏览/下载:4/0
  |  
提交时间:2019/12/23
Minimum free energy
Polynomial Time Approximation Schem
Pseudoknotted structure
Stacking
Stem
New Heuristic Algorithm of RNA Structure Prediction including Pseudoknots
期刊论文
Journal of Computers, 2013, 卷号: 8, 期号: 2, 页码: 279-283
作者:
Zhendong Liu
;
Daming Zhu
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  |  
浏览/下载:4/0
  |  
提交时间:2019/12/23
Heuristic algorithm
N-stem
Pseudoknots
RNA secondary structure
An Approximation Scheme for RNA folding Structure Prediction including Pseudoknots
会议论文
9th International Conference on Computational Intelligence and Security (CIS), DEC 14-15, 2013
作者:
Liu, Zhendong
;
Zhu, Daming
;
Cui, Wei
;
Liu, Nan
收藏
  |  
浏览/下载:3/0
  |  
提交时间:2019/12/31
pseudoknotted structure
minimum free energy
stem
Polynomial Time
Approximation Schem
stacking
Approximation algorithm of RNA folding including pseudoknots
期刊论文
International Review on Computers and Software, 2012, 卷号: 7, 期号: 6, 页码: 2942-2946
作者:
Liu, Zhendong
收藏
  |  
浏览/下载:3/0
  |  
提交时间:2019/12/23
Approximation algorithm
MFE principle
N-Stem
Pseudoknots
RNA structure
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