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理论物理研究所 [8]
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期刊论文 [15]
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学科主题:Biochemistry & Molecular Biology
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ISSEC: inferring contacts among protein secondary structure elements using deep object detection
期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 期号: 1, 页码: 503
作者:
Zhang, Qi
;
Zhu, Jianwei
;
Ju, Fusong
;
Kong, Lupeng
;
Sun, Shiwei
收藏
  |  
浏览/下载:49/0
  |  
提交时间:2021/09/27
HELIX-HELIX INTERACTIONS
INVERSE COVARIANCE ESTIMATION
RESIDUE CONTACTS
BETA-SHEETS
PREDICTION
MEMBRANE
Template-based and free modeling of I-TASSER and QUARK pipelines using predicted contact maps in CASP12
期刊论文
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2018, 卷号: 86, 页码: 136-151
作者:
Wang, YT
;
Zhang, CX
;
Mortuza, SM
;
He, BJ
;
Zhang, Y
收藏
  |  
浏览/下载:89/0
  |  
提交时间:2018/12/27
PROTEIN-STRUCTURE PREDICTION
RESIDUE CONTACTS
SEQUENCE
ALIGNMENTS
ACCURACY
NETWORKS
ROLL
Comparing NMR and X-ray protein structure: Lindemann-like parameters and NMR disorder
期刊论文
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2018, 卷号: 36, 期号: 9, 页码: 2331-2341
作者:
Sussman, JL
;
Faraggi, E
;
Dunker, AK
;
Kloczkowski, A
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  |  
浏览/下载:89/0
  |  
提交时间:2018/12/27
BACKBONE TORSION ANGLES
MAJOR URINARY PROTEIN
INTRINSIC DISORDER
STRUCTURE PREDICTION
SECONDARY STRUCTURE
CRYSTAL-STRUCTURE
DYNAMICS
DIFFRACTION
CRYSTALLOGRAPHY
RECOGNITION
MQAPsingle: A quasi single-model approach for estimation of the quality of individual protein structure models
期刊论文
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2016, 卷号: 84, 期号: 8, 页码: 1021-1028
作者:
Pawlowski, M
;
Kozlowski, L
;
Kloczkowski, A
;
Kloczkowski, A (reprint author), Nationwide Childrens Hosp, Res Inst, Battelle Ctr Math Med, 700 Childrens Dr, Columbus, OH 43205 USA.
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  |  
浏览/下载:83/0
  |  
提交时间:2017/10/13
Model Quality Assessment
Protein Structure
Protein Prediction
Mqap
Single-model Mqap
Model Correctness
Casp10
Effects of cooperation between translating ribosome and RNA polymerase on termination efficiency of the Rho-independent terminator
期刊论文
NUCLEIC ACIDS RESEARCH, 2016, 卷号: 44, 期号: 6, 页码: 2554-2563
作者:
Li, R
;
Zhang, Q
;
Li, JB
;
Shi, HL
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  |  
浏览/下载:12/0
  |  
提交时间:2019/04/08
INTRINSIC TRANSCRIPTION TERMINATION
GENOME-WIDE ANALYSIS
ESCHERICHIA-COLI
IN-VIVO
BACTERIOPHAGE-LAMBDA
GENE-EXPRESSION
NASCENT RNA
ELONGATION
ATTENUATOR
PREDICTION
Improving residue-residue contact prediction via low-rank and sparse decomposition of residue correlation matrix
期刊论文
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2016, 卷号: 472, 期号: 1, 页码: 217-222
作者:
Zhang, HC
;
Gao, YJ
;
Deng, MH
;
Wang, C
;
Zhu, JW
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  |  
浏览/下载:14/0
  |  
提交时间:2019/04/08
Protein contacts prediction
MULTIPLE SEQUENCE ALIGNMENTS
Correlation analysis
COEVOLUTION
Background correlation removal
MUTATIONS
Low-rank and sparse matrix decomposition
PROTEINS
EVOLUTIONARY
INFORMATION
COVARIANCE
SEARCH
Improving residue-residue contact prediction via low-rank and sparse decomposition of residue correlation matrix
期刊论文
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2016, 卷号: 472, 期号: 1, 页码: 217-222
作者:
Bu, DB
;
Zheng, WM
;
Zheng, WM (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China.
;
Bu, DB (reprint author), Chinese Acad Sci, Inst Comp Technol, Key Lab Intelligent Informat Proc, Beijing, Peoples R China.
;
Zhang, HC
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  |  
浏览/下载:37/0
  |  
提交时间:2017/10/13
Protein Contacts Prediction
Correlation Analysis
Background Correlation Removal
Low-rank And Sparse Matrix Decomposition
MQAPsingle: A quasi single-model approach for estimation of the quality of individual protein structure models
期刊论文
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2016, 卷号: 84, 期号: 8, 页码: 1021-1028
作者:
Pawlowski, M
;
Kozlowski, L
;
Kloczkowski, A
收藏
  |  
浏览/下载:47/0
  |  
提交时间:2019/04/08
model quality assessment
STRUCTURE PREDICTION
protein structure
FOLD RECOGNITION
protein prediction
NEURAL-NETWORKS
MQAP
SECONDARY STRUCTURE
single-model MQAP
META-SERVER
model correctness
CASP8
CASP10
ALIGNMENTS
CONSENSUS
PROFILES
PCONS
Comparative Analysis of MicroRNAs between Sporophyte and Gametophyte of Porphyra yezoensis
期刊论文
COMPARATIVE AND FUNCTIONAL GENOMICS, 2012, 页码: 912843
He, Linwen
;
Huang, Aiyou
;
Shen, Songdong
;
Niu, Jianfeng
;
Wang, Guangce
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  |  
浏览/下载:29/0
  |  
提交时间:2013/09/24
RNA SECONDARY STRUCTURE
CAENORHABDITIS-ELEGANS
PREDICTION
SEQUENCE
BIOGENESIS
EXPRESSION
DROSOPHILA
PLANTS
RHODOPHYTA
DIVERSE
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