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浏览/检索结果: 共9条，第1-9条 帮助 限定条件 专题：数学与系统科学研究院    第一署名单位    第一作者单位    通讯作者单位     已选(0)清除 条数/页：5101520253035404550556065707580859095100   排序方式：请选择作者升序作者降序题名升序题名降序发表日期升序发表日期降序提交时间升序提交时间降序 Deciphering the Spatial Modular Patterns of Tissues by Integrating Spatial and Single-Cell Transcriptomic Data 期刊论文 JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 页码: 14 作者:  Shan, Xu;  Chen, Jinyu;  Dong, Kangning;  Zhou, Wei;  Zhang, Shihua 收藏  |  浏览/下载：9/0  |  提交时间：2023/02/07 data integration  single-cell transcriptomics  spatial modular patterns  spatial transcriptomics   hDirect-MAP: projection-free single-cell modeling of response to checkpoint immunotherapy 期刊论文 BRIEFINGS IN BIOINFORMATICS, 2022, 卷号: 23, 期号: 2, 页码: 16 作者:  Lu, Yong;  Xue, Gang;  Zheng, Ningbo;  Han, Kun;  Yang, Wenzhong 收藏  |  浏览/下载：16/0  |  提交时间：2023/02/07 single-cell RNA sequencing (scRNA-seq)  single-cell mass cytometry (CyTOF)  Pareto optimization  projection-free single-cell modeling  response to immune checkpoint blockade   Identifying phenotype-associated subpopulations by integrating bulk and single-cell sequencing data 期刊论文 NATURE BIOTECHNOLOGY, 2021, 页码: 18 作者:  Sun, Duanchen;  Guan, Xiangnan;  Moran, Amy E.;  Wu, Ling-Yun;  Qian, David Z. 收藏  |  浏览/下载：29/0  |  提交时间：2022/04/02 A kernel non-negative matrix factorization framework for single cell clustering 期刊论文 APPLIED MATHEMATICAL MODELLING, 2021, 卷号: 90, 页码: 875-888 作者:  Jiang, Hao;  Yi, Ming;  Zhang, Shihua 收藏  |  浏览/下载：9/0  |  提交时间：2021/04/26 Single cell RNA-sequencing  Kernel non-negative matrix factorization  Cellular heterogeneity   Imputing single-cell RNA-seq data by considering cell heterogeneity and prior expression of dropouts 期刊论文 JOURNAL OF MOLECULAR CELL BIOLOGY, 2021, 卷号: 13, 期号: 1, 页码: 29-40 作者:  Zhang, Lihua;  Zhang, Shihua 收藏  |  浏览/下载：14/0  |  提交时间：2021/10/26 single-cell RNA-seq  dropout  imputation  low-rank  systems biology   NeuralEE: A GPU-Accelerated Elastic Embedding Dimensionality Reduction Method for Visualizing Large-Scale scRNA-Seq Data 期刊论文 FRONTIERS IN GENETICS, 2020, 卷号: 11, 页码: 8 作者:  Xiong, Jiankang;  Gong, Fuzhou;  Wan, Lin;  Ma, Liang 收藏  |  浏览/下载：20/0  |  提交时间：2021/01/14 single-cell RNA sequencing  elastic embedding  neural networks  large-scale  stochastic optimization  parametric models  generalizable models   Comparison of Computational Methods for Imputing Single-Cell RNA-Sequencing Data 期刊论文 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 2, 页码: 376-389 作者:  Zhang, Lihua;  Zhang, Shihua 收藏  |  浏览/下载：33/0  |  提交时间：2020/05/24 Gene expression  Sequential analysis  Bioinformatics  RNA  Matrix converters  Computational biology  Bayes methods  Single-cell RNA-sequencing technique  dropout event  imputation  algorithm  bioinformatics   DensityPath: an algorithm to visualize and reconstruct cell state-transition path on density landscape for single-cell RNA sequencing data 期刊论文 BIOINFORMATICS, 2019, 卷号: 35, 期号: 15, 页码: 2593-2601 作者:  Chen, Ziwei;  An, Shaokun;  Bai, Xiangqi;  Gong, Fuzhou;  Ma, Liang 收藏  |  浏览/下载：51/0  |  提交时间：2020/01/10 TSEE: an elastic embedding method to visualize the dynamic gene expression patterns of time series single-cell RNA sequencing data 期刊论文 BMC GENOMICS, 2019, 卷号: 20, 页码: 16 作者:  An, Shaokun;  Ma, Liang;  Wan, Lin 收藏  |  浏览/下载：51/0  |  提交时间：2019/10/28 Nonlinear dimensionality reduction  Elastic embedding  Visualization  Single-cell RNA sequencing  Time series  Cell fate decisions  Gene expression pattern  Oscillation  In-group proportion