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学科主题:Biochemistry & Molecular Biology
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Predicting protein inter-residue contacts using composite likelihood maximization and deep learning
期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 537
作者:
Zhang, Haicang
;
Zhang, Qi
;
Ju, Fusong
;
Zhu, Jianwei
;
Gao, Yujuan
收藏
  |  
浏览/下载:4/0
  |  
提交时间:2020/06/16
COUPLING ANALYSIS
SEQUENCE
EVOLUTIONARY
INFORMATION
NETWORKS
RANK
Improving residue-residue contact prediction via low-rank and sparse decomposition of residue correlation matrix
期刊论文
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2016, 卷号: 472, 期号: 1, 页码: 217-222
作者:
Zhang, HC
;
Gao, YJ
;
Deng, MH
;
Wang, C
;
Zhu, JW
收藏
  |  
浏览/下载:14/0
  |  
提交时间:2019/04/08
Protein contacts prediction
MULTIPLE SEQUENCE ALIGNMENTS
Correlation analysis
COEVOLUTION
Background correlation removal
MUTATIONS
Low-rank and sparse matrix decomposition
PROTEINS
EVOLUTIONARY
INFORMATION
COVARIANCE
SEARCH
Improving residue-residue contact prediction via low-rank and sparse decomposition of residue correlation matrix
期刊论文
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2016, 卷号: 472, 期号: 1, 页码: 217-222
作者:
Bu, DB
;
Zheng, WM
;
Zheng, WM (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China.
;
Bu, DB (reprint author), Chinese Acad Sci, Inst Comp Technol, Key Lab Intelligent Informat Proc, Beijing, Peoples R China.
;
Zhang, HC
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  |  
浏览/下载:39/0
  |  
提交时间:2017/10/13
Protein Contacts Prediction
Correlation Analysis
Background Correlation Removal
Low-rank And Sparse Matrix Decomposition
Arabidopsis RZFP34/CHYR1, a Ubiquitin E3 Ligase, Regulates Stomatal Movement and Drought Tolerance via SnRK2.6-Mediated Phosphorylation
期刊论文
PLANT CELL, 2015, 卷号: 27, 期号: 11, 页码: 3228-3244
作者:
Ding, Shuangcheng
;
Zhang, Bin
;
Qin, Feng
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  |  
浏览/下载:7/0
  |  
提交时间:2022/09/13
Leucine-specific domain modulates the aminoacylation and proofreading functional cycle of bacterial leucyl-tRNA synthetase
期刊论文
NUCLEIC ACIDS RESEARCH, 2013, 卷号: 41, 期号: 9, 页码: 4988-4998
作者:
Yan, W
;
Tan, M
;
Eriani, G
;
Wang, ED
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  |  
浏览/下载:13/0
  |  
提交时间:2015/07/22
The Coevolution of Phycobilisomes: Molecular Structure Adapting to Functional Evolution
期刊论文
COMPARATIVE AND FUNCTIONAL GENOMICS, 2011, 页码: 230236
作者:
Shi, Fei
;
Qin, Song
;
Wang, Yin-Chu
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  |  
浏览/下载:14/0
  |  
提交时间:2012/03/06
Multiple Sequence Alignment
Crystal-structure Analysis
2.2 Angstrom Resolution
C-phycocyanin
Spirulina-platensis
Statistical-methods
Lacks Thylakoids
Protein Residues
Cyanobacterium
Phycobiliproteins
Combined X-ray and NMR Analysis of the Stability of the Cyclotide Cystine Knot Fold That Underpins Its Insecticidal Activity and Potential Use as a Drug Scaffold
期刊论文
JOURNAL OF BIOLOGICAL CHEMISTRY, 2009, 卷号: 284, 期号: 16, 页码: 10672-10683
作者:
Wang, Conan K.
;
Hu, Shu-Hong
;
Martin, Jennifer L.
;
Sjogren, Tove
;
Hajdu, Janos
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  |  
浏览/下载:15/0
  |  
提交时间:2012/03/21
Ligusticum Chuanxiong
4-pentylcyclohex-3-ene-1 Alpha
Phthalide Derivatives
2 Beta-diol
Ligusticoside a
Wallichii
Phthalides
Constituents
Derivatives
Rhizomes
Dimers
Structure of the Fab fragment of therapeutic antibody Ofatumumab provides insights into the recognition mechanism with CD20
期刊论文
MOLECULAR IMMUNOLOGY, 2009, 卷号: 46, 期号: 1, 页码: 2419-2423
作者:
Du, JM
;
Yang, H
;
Guo, YJ
;
Ding, JP
收藏
  |  
浏览/下载:14/0
  |  
提交时间:2015/07/22
CD20
Ofatumumab
2F2
Therapeutic antibody
Crystal structure
The Ternary Structure of the Double-headed Arrowhead Protease Inhibitor API-A Complexed with Two Trypsins Reveals a Novel Reactive Site Conformation
期刊论文
JOURNAL OF BIOLOGICAL CHEMISTRY, 2009, 卷号: 284, 期号: 39, 页码: 26676-26684
作者:
Bao, R
;
Zhou, CZ
;
Jiang, CH
;
Lin, SX
;
Chi, CW
收藏
  |  
浏览/下载:19/0
  |  
提交时间:2015/07/22
Residues Asp164 and Glu165 at the substrate entryway function potently in substrate orientation of alanine racemase from E-coli: Enzymatic characterization with crystal structure analysis
期刊论文
PROTEIN SCIENCE, 2008, 卷号: 17, 期号: 6, 页码: 1066-1076
作者:
Wu, DL
;
Hu, TC
;
Zhang, L
;
Chen, J
;
Du, J
收藏
  |  
浏览/下载:18/0
  |  
提交时间:2015/07/22
alanine racemase
substrate entryway
crystal structure
Escherichia coli
pyridoxal 5'-phosphate
charged residues
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