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学科主题:Biochemistry & Molecular Biology
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Plastid phylogenomic analyses of the Selaginella sanguinolenta group (Selaginellaceae) reveal conflict signatures resulting from sequence types, outlier genes, and pervasive RNA editing
期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2022, 卷号: 173
作者:
Zhang, Meng-Hua
;
Xiang, Qiao-Ping
;
Zhang, Xian-Chun
收藏
  |  
浏览/下载:1/0
  |  
提交时间:2024/03/07
Alternative topologies
Gene-tree conflict
Plastome
Phylogenetic signal
Selaginella sanguinolenta group
Species trees
A Collinearity-Incorporating Homology Inference Strategy for Connecting Emerging Assemblies in the Triticeae Tribe as a Pilot Practice in the Plant Pangenomic Era
期刊论文
MOLECULAR PLANT, 2020, 卷号: 13, 期号: 12, 页码: 1694-1708
作者:
Chen, Yongming
;
Song, Wanjun
;
Xie, Xiaoming
;
Wang, Zihao
;
Guan, Panfeng
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  |  
浏览/下载:18/0
  |  
提交时间:2022/03/01
homology inference
collinearity
database
pangenome
Triticeae tribe
polyploid
WGDdetector: a pipeline for detecting whole genome duplication events using the genome or transcriptome annotations
期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 期号: x, 页码: -
作者:
Yang, Yongzhi
;
Li, Ying
;
Chen, Qiao
;
Sun, Yongshuai
;
Lu, Zhiqiang
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  |  
浏览/下载:187/0
  |  
提交时间:2019/04/22
Sequence
Gene
Polyploidy
Protein
Plants
Evolution
Inference
Reveals
Dosage
DCA for genome-wide epistasis analysis: the statistical genetics perspective
期刊论文
PHYSICAL BIOLOGY, 2019, 卷号: 16, 期号: 2, 页码: 26002
作者:
Gao, CY
;
Cecconi, F
;
Vulpiani, A
;
Zhou, HJ
;
Aurell, E
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  |  
浏览/下载:73/0
  |  
提交时间:2019/07/19
DIRECT-COUPLING ANALYSIS
PROTEIN-STRUCTURE
CONTACTS
HIV
IDENTIFICATION
RECOMBINATION
LINKAGE
LANDSCAPE
INFERENCE
MODEL
DCA for genome-wide epistasis analysis: the statistical genetics perspective
期刊论文
PHYSICAL BIOLOGY, 2019, 卷号: 16, 期号: 2, 页码: 26002
作者:
Gao, Chen-Yi
;
Cecconi, Fabio
;
Vulpiani, Angelo
;
Zhou, Hai-Jun
;
Aurell, Erik
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  |  
浏览/下载:56/0
  |  
提交时间:2020/11/26
DIRECT-COUPLING ANALYSIS
PROTEIN-STRUCTURE
CONTACTS
HIV
IDENTIFICATION
RECOMBINATION
LINKAGE
LANDSCAPE
INFERENCE
MODEL
Improving residue-residue contact prediction via low-rank and sparse decomposition of residue correlation matrix
期刊论文
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2016, 卷号: 472, 期号: 1, 页码: 217-222
作者:
Zhang, HC
;
Gao, YJ
;
Deng, MH
;
Wang, C
;
Zhu, JW
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  |  
浏览/下载:14/0
  |  
提交时间:2019/04/08
Protein contacts prediction
MULTIPLE SEQUENCE ALIGNMENTS
Correlation analysis
COEVOLUTION
Background correlation removal
MUTATIONS
Low-rank and sparse matrix decomposition
PROTEINS
EVOLUTIONARY
INFORMATION
COVARIANCE
SEARCH
Improving residue-residue contact prediction via low-rank and sparse decomposition of residue correlation matrix
期刊论文
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2016, 卷号: 472, 期号: 1, 页码: 217-222
作者:
Bu, DB
;
Zheng, WM
;
Zheng, WM (reprint author), Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China.
;
Bu, DB (reprint author), Chinese Acad Sci, Inst Comp Technol, Key Lab Intelligent Informat Proc, Beijing, Peoples R China.
;
Zhang, HC
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  |  
浏览/下载:39/0
  |  
提交时间:2017/10/13
Protein Contacts Prediction
Correlation Analysis
Background Correlation Removal
Low-rank And Sparse Matrix Decomposition
Multilocus species tree analyses resolve the ancient radiation of the subtribe Zizaniinae (Poaceae)
期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2015, 卷号: 84, 页码: 232-239
作者:
Tang, Liang
;
Zou, Xin-hui
;
Zhang, Lin-bin
;
Ge, Song
收藏
  |  
浏览/下载:10/0
  |  
提交时间:2022/09/13
Ancient rapid radiation
Incomplete lineage sorting
Multilocus data
Species tree
Zizaniinae
Induction of apoptosis through ER stress and TP53 in MCF-7 cells by the nanoparticle [Gd@C-82(OH)(22)](n): A systems biology study
期刊论文
METHODS, 2014, 卷号: 67, 期号: 3, 页码: 394-406
作者:
Wang, L
;
Meng, J
;
Cao, WP
;
Li, QZ
;
Qiu, YQ
收藏
  |  
浏览/下载:15/0
  |  
提交时间:2016/04/08
Nanoparticle
Microarray normalization
Transcriptional inference
Apoptosis
ER stress
TP53
BuildSummary: Using a Group-Based Approach To Improve the Sensitivity of Peptide/Protein Identification in Shotgun Proteomics
期刊论文
JOURNAL OF PROTEOME RESEARCH, 2012, 卷号: 11, 期号: 3, 页码: 1494-1502
作者:
Sheng, QH
;
Dai, J
;
Wu, YB
;
Tang, HX
;
Zeng, R
收藏
  |  
浏览/下载:17/0
  |  
提交时间:2015/07/22
group-based
BuildSummary
proteomics
protein identification
mass spectrometry
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