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上海药物研究所 [3]
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期刊论文 [9]
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2017 [10]
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Physics [1]
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How Well Can Implicit Solvent Simulations Explore Folding Pathways? A Quantitative Analysis of alpha-Helix Bundle Proteins
期刊论文
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2017, 卷号: 13, 期号: 12, 页码: 6177-6190
作者:
Shao, Qiang
;
Zhu, Weiliang
收藏
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浏览/下载:12/0
  |  
提交时间:2019/01/08
Effectively explore metastable states of proteins by adaptive nonequilibrium driving simulations
期刊论文
Physical review e, 2017, 卷号: 95, 期号: 3, 页码: 10
作者:
Wan, Biao
;
Xu, Shun
;
Zhou, Xin
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浏览/下载:21/0
  |  
提交时间:2019/05/09
Sampling conformational space of intrinsically disordered proteins in explicit solvent: Comparison between well-tempered ensemble approach and solute tempering method
期刊论文
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2017, 卷号: 72, 页码: 136-147
作者:
Han, Mengzhi
;
Xu, Ji
;
Ren, Ying
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  |  
浏览/下载:31/0
  |  
提交时间:2017/05/02
Intrinsically disordered protein
Well-tempered ensemble
Replica exchange with solute tempering
Free energy surface
Molecular dynamics
Determining Protein Folding Pathway and Associated Energetics through Partitioned Integrated-Tempering-Sampling Simulation
期刊论文
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2017, 卷号: 13, 期号: 3, 页码: 1229-1243
作者:
Shao, Qiang
;
Shi, Jiye
;
Zhu, Weiliang
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  |  
浏览/下载:11/0
  |  
提交时间:2019/01/08
Energetics and structural characterization of the "DFG-flip'' conformational transition of B-RAF kinase: a SITS molecular dynamics study
期刊论文
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2017, 卷号: 19, 期号: 2, 页码: 1257-1267
作者:
Shao, Qiang
;
Xu, Zhijian
;
Wang, Jinan
;
Shi, Jiye
;
Zhu, Weiliang
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  |  
浏览/下载:18/0
  |  
提交时间:2019/01/08
Stabilities and Dynamics of Protein Folding Nuclei by Molecular Dynamics Simulation
期刊论文
COMMUNICATIONS IN THEORETICAL PHYSICS, 2017, 卷号: 68, 期号: 1, 页码: 137-148
作者:
Song, YS
;
Zhou, X
;
Zheng, WM
;
Wang, YT
;
Wang, YT (reprint author), Univ Chinese Acad Sci, Sch Phys Sci, Beijing 100049, Peoples R China.
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浏览/下载:55/0
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提交时间:2017/12/21
Protein Folding
Molecular Dynamics Simulation
Structure Prediction
Molecular motions and free-energy landscape of serine proteinase K in relation to its cold-adaptation: a comparative molecular dynamics simulation study and the underlying mechanisms
期刊论文
RSC ADVANCES, 2017, 卷号: 7, 期号: 46
作者:
Sang, Peng
;
Du, Xing
;
Yang, Li-Quan
;
Meng, Zhao-Hui
;
Liu, Shu-Qun
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浏览/下载:2/0
  |  
提交时间:2019/12/04
Computing Optimal Interfacial Structure of Modulated Phases
其他
2017-01-01
Xu, Jie
;
Wang, Chu
;
Shi, An-Chang
;
Zhang, Pingwen
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浏览/下载:4/0
  |  
提交时间:2017/12/03
Interface
modulated phase
metastable state
compatibility
Landau-Brazovskiimodel
BLOCK-COPOLYMERS
NONUNIFORM SYSTEM
GRADIENT METHODS
FREE-ENERGY
NUCLEATION
DEFECTS
MIXTURE
MODEL
Extended elastic model for flow of metallic glasses
期刊论文
ACTA PHYSICA SINICA, 2017, 卷号: 66, 期号: 17, 页码: 176102
作者:
Wang Jun-Qiang
;
Ouyang Su
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  |  
浏览/下载:12/0
  |  
提交时间:2017/12/25
Compromise in competition between free energy and binding effect of intrinsically disordered protein p53 C-terminal domain
期刊论文
MOLECULAR SIMULATION, 2017, 卷号: 43, 期号: 2, 页码: 110-120
作者:
Han, Mengzhi
;
Xu, Ji
;
Ren, Ying
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  |  
浏览/下载:32/0
  |  
提交时间:2017/03/24
Tumour Suppressor P53
Multiple Mechanisms
Dynamic Structures
Compromise In Competition
Free Energy Landscape
Molecular Dynamics
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