Gene expression profile analysis indicate SEPALLATA3 and AGL15 potentially involved in arabidopsis silique dehiscence by regulating glycosyl hydrolase

doi:10.1007/s12374-016-0567-5

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	Gene expression profile analysis indicate SEPALLATA3 and AGL15 potentially involved in arabidopsis silique dehiscence by regulating glycosyl hydrolase
	Jiang, Xingshan ; He, Hanjun 1; Wang, Ting 1,3; Wang, Xiaojing ; Wu, Hong 1
刊名	JOURNAL OF PLANT BIOLOGY
	2016
卷号	59 期号:2 页码:133-142
关键词	Arabidopsis thaliana Gene expression Glycosyl hydrolase Microarray Silique dehiscence Transcription factors (TFs)
ISSN号	1226-9239
DOI	10.1007/s12374-016-0567-5
文献子类	Article
英文摘要	Fruit dehiscence is an essential developmental process for certain economic crops that dramatically impacts crop yields and involves the altered regulation of thousands of genes and corresponding biological processes. The regulation of fruit dehiscence is complex; although some regulatory genes have been characterized, the overall mechanism is still unknown. In this study, we used microarray analysis to screen the expression patterns of genes during three stages of Arabidopsis thaliana silique dehiscence (stages 11, 15, and 17). Differentially expressed genes (DEGs) were detected, and the combination of functional enrichment analysis with Short Time-series Expression Miner (STEM) clustering analysis was used to explore the overall gene expression changes and related functions during fruit dehiscence. A total of 9 specific gene expression clusters and corresponding functions were found. Moreover, transcription factor (TF) enrichment analysis for these gene clusters showed that two TFs (SEPALLATA3 and AGL15) maybe key regulatory factors for silique dehiscence because they target many glycosyl hydrolases in a certain cluster related to cell wall degradation. Taken together, our data enable connections to be drawn among specic biological functions, genes and TFs, which supports the development of network models to elucidate the process of silique dehiscence.
学科主题	Plant Sciences
电子版国际标准刊号	1867-0725
出版地	HEIDELBERG
WOS关键词	BRASSICA-NAPUS L ; CELL-WALL ; FRUIT-DEVELOPMENT ; POD SHATTER ; FLOWER ; DOMAIN ; SENESCENCE ; ABSCISSION ; BETA-1,3-GLUCANASE ; SEPARATION
WOS研究方向	Science Citation Index Expanded (SCI-EXPANDED)
语种	英语
出版者	SPRINGER HEIDELBERG
WOS记录号	WOS:000374391300005
资助机构	Nature Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31070159, 31200151]
内容类型	期刊论文
源URL	[http://ir.ibcas.ac.cn/handle/2S10CLM1/25267]
专题	中科院北方资源植物重点实验室
作者单位	1.S China Normal Univ, Coll Life Sci, Guangdong Prov Key Lab Biotechnol Plant Dev, Guangzhou 510631, Guangdong, Peoples R China 2.Chinese Acad Sci, Inst Bot, Key Lab Plant Resources, Beijing 100093, Peoples R China 3.South China Agr Univ, State Key Lab Conservat & Utilizat Subtrop Agrobi, Guangzhou 510642, Guangdong, Peoples R China
推荐引用方式 GB/T 7714	Jiang, Xingshan,He, Hanjun,Wang, Ting,et al. Gene expression profile analysis indicate SEPALLATA3 and AGL15 potentially involved in arabidopsis silique dehiscence by regulating glycosyl hydrolase[J]. JOURNAL OF PLANT BIOLOGY,2016,59(2):133-142.
APA	Jiang, Xingshan,He, Hanjun,Wang, Ting,Wang, Xiaojing,&Wu, Hong.(2016).Gene expression profile analysis indicate SEPALLATA3 and AGL15 potentially involved in arabidopsis silique dehiscence by regulating glycosyl hydrolase.JOURNAL OF PLANT BIOLOGY,59(2),133-142.
MLA	Jiang, Xingshan,et al."Gene expression profile analysis indicate SEPALLATA3 and AGL15 potentially involved in arabidopsis silique dehiscence by regulating glycosyl hydrolase".JOURNAL OF PLANT BIOLOGY 59.2(2016):133-142.