Complete chloroplast genome sequence of the medical fern Drynaria roosii and its phylogenetic analysis

doi:10.1104/pp.17.00202

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	Complete chloroplast genome sequence of the medical fern Drynaria roosii and its phylogenetic analysis
	Sun, Meiyu ; Li, Jingrui ; Li, Dong ; Shi, Lei 1
刊名	MITOCHONDRIAL DNA PART B-RESOURCES
	2017
卷号	2 期号:1 页码:7-8
关键词	Chloroplast genome Drynaria roosii de novo sequencing phylogenetic relationship
DOI	10.1104/pp.17.00202
文献子类	Article
英文摘要	In this study, the complete chloroplast genome of the medical fern Drynaria roosii was completed and analyzed in order to understand the evolution of the genome of the fern lineages. In D. roosii, the circular double-stranded cpDNA sequence of 154,305 bp consists of two inverted repeat (IRA and IRB) regions of 23,416 bp each, a large single-copy (LSC) region of 86,040 bp and a small single-copy (SSC) region of 21,433 bp. The overall GC content is 40.92% and the GC contents of LSC, IRs, and SSC are 39.75%, 45.07%, and 36.60%, respectively. D. roosii with 108 annotated unique genes included 85 protein-coding genes, 19 tRNA genes, and 4 rRNA genes. Using the whole chloroplast genome sequences alignment of 18 species from ferns, the phylogenetic relationship was built. The phylogenetic position of D. roosii was closely clustered with Adiantum capillus-veneris, Cheilanthes lindheimeri, and Pteridium aquilium subsp. Aquilinum as sister species and then clustered with Alsophila spinulosa, Lygodium japonicum, Diplopterygium glaucum, and Osmundastrum cinnamomeum. D. roosii belongs to Polypodiales. The complete chloroplast genome of D. roosii provides utility information for ferns evolutionary and genomic studies.
学科主题	Plant Sciences
电子版国际标准刊号	2380-2359
出版地	ABINGDON
语种	英语
出版者	TAYLOR & FRANCIS LTD
WOS记录号	WOS:000403152200040
资助机构	National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [81573519]
内容类型	期刊论文
源URL	[http://ir.ibcas.ac.cn/handle/2S10CLM1/22232]
专题	中科院北方资源植物重点实验室
作者单位	1.Chinese Acad Sci, Key Lab Plant Resources, Inst Bot, Beijing 100093, Peoples R China 2.Chinese Acad Sci, Beijing Bot Garden, Inst Bot, Beijing 100093, Peoples R China
推荐引用方式 GB/T 7714	Sun, Meiyu,Li, Jingrui,Li, Dong,et al. Complete chloroplast genome sequence of the medical fern Drynaria roosii and its phylogenetic analysis[J]. MITOCHONDRIAL DNA PART B-RESOURCES,2017,2(1):7-8.
APA	Sun, Meiyu,Li, Jingrui,Li, Dong,&Shi, Lei.(2017).Complete chloroplast genome sequence of the medical fern Drynaria roosii and its phylogenetic analysis.MITOCHONDRIAL DNA PART B-RESOURCES,2(1),7-8.
MLA	Sun, Meiyu,et al."Complete chloroplast genome sequence of the medical fern Drynaria roosii and its phylogenetic analysis".MITOCHONDRIAL DNA PART B-RESOURCES 2.1(2017):7-8.