Interspecific chloroplast genome sequence diversity and genomic resources in Diospyros

doi:10.1186/s12870-018-1421-3

CORC > 植物研究所 > 中国科学院植物研究所 > 系统与进化植物学国家重点实验室

	Interspecific chloroplast genome sequence diversity and genomic resources in Diospyros
	Li, Wenqing ; Liu, Yanlei 3,4; Yang, Yong 2; Xie, Xiaoman ; Lu, Yizeng ; Yang, Zhirong 4; Jin, Xiaobai 1; Dong, Wenpan 4,5; Suo, Zhili 4
刊名	BMC PLANT BIOLOGY
	2018
卷号	18
关键词	Diospyros Chloroplast genome Hyper-variable region Genetic diversity
ISSN号	1471-2229
DOI	10.1186/s12870-018-1421-3
文献子类	Article
英文摘要	Background: Fruits of persimmon plants are traditional healthy food in China, Korea and Japan. However, due to the shortage of morphological and DNA markers, the development of persimmon industry has been heavily inhibited. Results: Chloroplast genomes of Diospyros cathayensis, D. virginiana, D. rhombifolia and D. deyangensis were newly sequenced. Comparative analyses of ten chloroplast genomes including six previously published chloroplast genomes of Diospyros provided new insights into the genome sequence diversity and genomic resources of the genus. Eight hyper-variable regions, trnH-psbA, rps16-tmQ, rpoB-trnC, rps4-trnT-trnL, ndhF, ndhF-rpl32-trnL, ycf1a, and ycf1b, were discovered and can be used as chloroplast DNA markers at/above species levels. The complete chloroplast genome sequences provided the best resolution at inter-specific level in comparison with different chloroplast DNA sequence datasets. Conclusion: Diospyros oleifera, D. deyangensis, D. virginiana, D. glaucifolia, D. lotus and D. jinzaoshi are important wild species closely related to the cultivated persimmon D. kaki. The hyper-variable regions can be used as DNA markers for global genetic diversity detection of Diospyros. Deeper study on these taxa would be helpful for elucidating the origin of D. kaki.
学科主题	Plant Sciences
出版地	LONDON
WOS关键词	GENETIC DIVERSITY ; PERSIMMON ; L. ; EBENACEAE ; SOFTWARE ; MARKERS ; KAKI ; YCF1 ; PHYLOGENY ; EVOLUTION
语种	英语
出版者	BMC
WOS记录号	WOS:000445747400001
资助机构	Collection, Conservation and Evaluation of Forest Tree Germplasm Resources of Shandong Provincial Agricultural Elite Varieties Project [LKZ201496-1-3, 2017YFD0600604, LCNZ2016-36] ; National Forest Genetic Resources Platform [2005DKA21003] ; National Service Sharing Infrastructure of Agricultural Crop Germplasm Resources of Persimmon Resources [NICGR2017-50]
内容类型	期刊论文
源URL	[http://ir.ibcas.ac.cn/handle/2S10CLM1/20337]
专题	系统与进化植物学国家重点实验室
作者单位	1.Northwest A&F Univ, Coll Hort, Yangling, Shaanxi, Peoples R China 2.Univ Chinese Acad Sci, Beijing, Peoples R China 3.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing, Peoples R China 4.Shandong Prov Ctr Forest Tree Germplasm Resources, Jinan, Shandong, Peoples R China 5.Chinese Acad Sci, Inst Bot, Beijing Bot Garden, Beijing, Peoples R China 6.Peking Univ, Acad Adv Interdisciplinary Studies, Peking Tsinghua Ctr Life Sci, Beijing, Peoples R China
推荐引用方式 GB/T 7714	Li, Wenqing,Liu, Yanlei,Yang, Yong,et al. Interspecific chloroplast genome sequence diversity and genomic resources in Diospyros[J]. BMC PLANT BIOLOGY,2018,18.
APA	Li, Wenqing.,Liu, Yanlei.,Yang, Yong.,Xie, Xiaoman.,Lu, Yizeng.,...&Suo, Zhili.(2018).Interspecific chloroplast genome sequence diversity and genomic resources in Diospyros.BMC PLANT BIOLOGY,18.
MLA	Li, Wenqing,et al."Interspecific chloroplast genome sequence diversity and genomic resources in Diospyros".BMC PLANT BIOLOGY 18(2018).