Genome-Wide Identification and Characterization of the SHI-Related Sequence Gene Family in Rice
Yang, Jun3; Xu, Peng2; Yu, Diqiu1,5
刊名EVOLUTIONARY BIOINFORMATICS
2020
卷号16期号:x页码:-
关键词GIBBERELLIN RESPONSES ARABIDOPSIS AUXIN BIOSYNTHESIS SMART STY1
ISSN号1176-9343
DOI10.1177/1176934320941495
英文摘要

Rice (Oryza sativa) yield is correlated to various factors. Transcription regulators are important factors, such as the typical SHORT INTERNODES-related sequences (SRSs), which encode proteins with single zinc finger motifs. Nevertheless, knowledge regarding the evolutionary and functional characteristics of theSRSgene family members in rice is insufficient. Therefore, we performed a genome-wide screening and characterization of theOsSRSgene family inOryza sativajaponica rice. We also examined the SRS proteins from 11 rice sub-species, consisting of 3 cultivars, 6 wild varieties, and 2 other genome types. SRS members from maize, sorghum,Brachypodium distachyon, andArabidopsiswere also investigated. All these SRS proteins exhibited species-specific characteristics, as well as monocot- and dicot-specific characteristics, as assessed by phylogenetic analysis, which was further validated by gene structure and motif analyses. Genome comparisons revealed that segmental duplications may have played significant roles in the recombination of theOsSRSgene family and their expression levels. The family was mainly subjected to purifying selective pressure. In addition, the expression data demonstrated the distinct responses ofOsSRSgenes to various abiotic stresses and hormonal treatments, indicating their functional divergence. Our study provides a good reference for elucidating the functions ofSRSgenes in rice.

学科主题Evolutionary Biology ; Mathematical & Computational Biology
语种英语
WOS记录号WOS:000570676400001
内容类型期刊论文
源URL[http://ir.xtbg.org.cn/handle/353005/11814]  
专题西双版纳热带植物园_植物分子生物学研究组
作者单位1.Chinese Acad Sci, Core Bot Gardens, Ctr Econ Bot, Mengla, Peoples R China
2.Univ Chinese Acad Sci, Coll Life Sci, Beijing, Peoples R China
3.Chinese Acad Sci, Xishuangbanna Trop Bot Garden, CAS Key Lab Trop Plant Resources & Sustainable Us, Mengla 666303, Yunnan, Peoples R China
4.Yunnan Univ, Lab Conservat & Utilizat Bioresources Yunnan, Kunming, Yunnan, Peoples R China
5.Chinese Acad Sci, Innovat Acad Seed Design, Xishuangbanna Trop Bot Garden, CAS Key Lab Trop Plant Resources & Sustainable Us, Kunming, Yunnan, Peoples R China
推荐引用方式
GB/T 7714
Yang, Jun,Xu, Peng,Yu, Diqiu. Genome-Wide Identification and Characterization of the SHI-Related Sequence Gene Family in Rice[J]. EVOLUTIONARY BIOINFORMATICS,2020,16(x):-.
APA Yang, Jun,Xu, Peng,&Yu, Diqiu.(2020).Genome-Wide Identification and Characterization of the SHI-Related Sequence Gene Family in Rice.EVOLUTIONARY BIOINFORMATICS,16(x),-.
MLA Yang, Jun,et al."Genome-Wide Identification and Characterization of the SHI-Related Sequence Gene Family in Rice".EVOLUTIONARY BIOINFORMATICS 16.x(2020):-.
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