Characterization of the complete chloroplast genome sequence of Gymnocoronis spilanthoides (Asteraceae, Eupatorieae) and its phylogenetic implications

doi:10.1080/23802359.2019.1574622

CORC > 成都生物研究所 > 中国科学院成都生物研究所 > 生物多样性与生态系统服务领域 > 生态研究

	Characterization of the complete chloroplast genome sequence of Gymnocoronis spilanthoides (Asteraceae, Eupatorieae) and its phylogenetic implications
	Fu, Zhi-Xi 2,3; Wang, Xiu-Hua 3; Ou, Chuan-Zhou 2; Lu, Xin 4; Hu, Jun 1; He, Gang 6; Tian, Xiang-Yu 5
刊名	MITOCHONDRIAL DNA PART B-RESOURCES
	2019
卷号	4 期号:1 页码:694-695
关键词	Gymnocoronis spilanthoides chloroplast genome phylogenomics analysis
ISSN号	2380-2359
DOI	10.1080/23802359.2019.1574622
产权排序	4
文献子类	Article
英文摘要	This study was the first report about complete chioroplast genome of Gymnocoronis spilanthoides (Asteraceae, Eupatorieae), a critically invasive plant. The circular whole cp genome of G. spilanthoides was 150,799 by in length, contained a large single-copy (LSC) region of 82,514 by and a small single-copy (SSC) region of 18,471 bp. These two regions were separated by a pair of inverted repeat regions (IRa and IRb), each of them 24,907 bp in length. A total of 135 functional genes were encoded, consisted of 89 protein-coding genes, 38 tRNA genes, and eight rRNA genes. The overall GC content of the chloroplast genome sequence was 37.5%, and the GC contents of the LSC, SSC, and IR regions were 35.6, 30.9, and 37.0%, respectively. The phylogenetic analysis by maximum likelihood showed that the G. spilanthoides was clustered into Glade of Mikania and Ageratina by strong support values, and thus was closely related to members of Heliantheae and Inuleae. These results will be useful for the future studies of the naturalized and potentially invasive aquatic alien in the worldwide.
学科主题	Molecular Biology & Genetics
URL标识	查看原文
WOS研究方向	Genetics & Heredity
语种	英语
出版者	TAYLOR & FRANCIS LTD
WOS记录号	WOS:000460837400001
内容类型	期刊论文
源URL	[http://210.75.237.14/handle/351003/31145]
专题	生物多样性与生态系统服务领域_生态研究
通讯作者	Tian, Xiang-Yu
作者单位	1.Chinese Acad Sci, Chengdu Inst Biol, Chengdu, Sichuan, Peoples R China; 2.Sichuan Normal Univ, Coll Life Sci, Chengdu, Sichuan, Peoples R China; 3.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing, Peoples R China; 4.Chengdu Customs Dist, Chengdu, Sichuan, Peoples R China; 5.Beijing Normal Univ, Coll Life Sci, Beijing, Peoples R China 6.Chengdu Univ, Dept Key Lab Med & Edible Plant Resource Dev Sich, Chengdu, Sichuan, Peoples R China;
推荐引用方式 GB/T 7714	Fu, Zhi-Xi,Wang, Xiu-Hua,Ou, Chuan-Zhou,et al. Characterization of the complete chloroplast genome sequence of Gymnocoronis spilanthoides (Asteraceae, Eupatorieae) and its phylogenetic implications[J]. MITOCHONDRIAL DNA PART B-RESOURCES,2019,4(1):694-695.
APA	Fu, Zhi-Xi.,Wang, Xiu-Hua.,Ou, Chuan-Zhou.,Lu, Xin.,Hu, Jun.,...&Tian, Xiang-Yu.(2019).Characterization of the complete chloroplast genome sequence of Gymnocoronis spilanthoides (Asteraceae, Eupatorieae) and its phylogenetic implications.MITOCHONDRIAL DNA PART B-RESOURCES,4(1),694-695.
MLA	Fu, Zhi-Xi,et al."Characterization of the complete chloroplast genome sequence of Gymnocoronis spilanthoides (Asteraceae, Eupatorieae) and its phylogenetic implications".MITOCHONDRIAL DNA PART B-RESOURCES 4.1(2019):694-695.