Transcriptome-wide identification and characterization of the Sox gene family and microsatellites for Corbicula fluminea

doi:10.7717/peerj.7770

CORC > 水生生物研究所 > 中科院水生所知识产出（2009年前） > 其他 > 期刊论文

	Transcriptome-wide identification and characterization of the Sox gene family and microsatellites for Corbicula fluminea
	Zhu, Chuankun 1,2; Zhang, Lei 2,3; Ding, Huaiyu 1,2; Pan, Zhengjun 1,2
刊名	PEERJ
	2019-10-22
卷号	7 期号:1 页码:25
关键词	Corbicula fluminea Transcriptome Sox gene family Microsatellite
ISSN号	2167-8359
DOI	10.7717/peerj.7770
英文摘要	The Asian clam, Corbicula fluminea, is a commonly consumed small freshwater bivalve in East Asia. However, available genetic information of this clam is still limited. In this study, the transcriptome of female C. fluminea was sequenced using the Illumina HiSeq 2500 platform. A total of 89,563 unigenes were assembled with an average length of 859 bp, and 36.7% of them were successfully annotated. Six members of Sox gene family namely SoxB1, SoxB2, SoxC, SoxD, SoxE and SoxF were identified. Based on these genes, the divergence time of C. fluminea was estimated to be around 476 million years ago. Furthermore, a total of 3,117 microsatellites were detected with a distribution density of 1:12,960 bp. Fifty of these microsatellites were randomly selected for validation, and 45 of them were successfully amplified with 31 polymorphic ones. The data obtained in this study will provide useful information for future genetic and genomic studies in C. fluminea.
资助项目	Key Laboratory of Fishery Sustainable Development and Water Environment Protection of Huai'an City, Huai'an Sub Center of the Institute of Hydrobiology, Chinese Academy of Sciences[HASBSY201303] ; Start-up Funds of Scientific Research from Huaiyin Normal University[31ZCK00]
WOS关键词	GENOME DUPLICATION ; DEEP TRANSCRIPTOME ; MARKER DEVELOPMENT ; REDUNDANT ROLES ; EXPRESSION ; EVOLUTION ; ANNOTATION ; REVEALS ; PEARL ; RESOURCE
WOS研究方向	Science & Technology - Other Topics
语种	英语
出版者	PEERJ INC
WOS记录号	WOS:000491305900002
资助机构	Key Laboratory of Fishery Sustainable Development and Water Environment Protection of Huai'an City, Huai'an Sub Center of the Institute of Hydrobiology, Chinese Academy of Sciences ; Key Laboratory of Fishery Sustainable Development and Water Environment Protection of Huai'an City, Huai'an Sub Center of the Institute of Hydrobiology, Chinese Academy of Sciences ; Key Laboratory of Fishery Sustainable Development and Water Environment Protection of Huai'an City, Huai'an Sub Center of the Institute of Hydrobiology, Chinese Academy of Sciences ; Key Laboratory of Fishery Sustainable Development and Water Environment Protection of Huai'an City, Huai'an Sub Center of the Institute of Hydrobiology, Chinese Academy of Sciences ; Key Laboratory of Fishery Sustainable Development and Water Environment Protection of Huai'an City, Huai'an Sub Center of the Institute of Hydrobiology, Chinese Academy of Sciences ; Key Laboratory of Fishery Sustainable Development and Water Environment Protection of Huai'an City, Huai'an Sub Center of the Institute of Hydrobiology, Chinese Academy of Sciences ; Key Laboratory of Fishery Sustainable Development and Water Environment Protection of Huai'an City, Huai'an Sub Center of the Institute of Hydrobiology, Chinese Academy of Sciences ; Key Laboratory of Fishery Sustainable Development and Water Environment Protection of Huai'an City, Huai'an Sub Center of the Institute of Hydrobiology, Chinese Academy of Sciences ; Start-up Funds of Scientific Research from Huaiyin Normal University ; Start-up Funds of Scientific Research from Huaiyin Normal University ; Start-up Funds of Scientific Research from Huaiyin Normal University ; Start-up Funds of Scientific Research from Huaiyin Normal University ; Start-up Funds of Scientific Research from Huaiyin Normal University ; Start-up Funds of Scientific Research from Huaiyin Normal University ; Start-up Funds of Scientific Research from Huaiyin Normal University ; Start-up Funds of Scientific Research from Huaiyin Normal University ; Key Laboratory of Fishery Sustainable Development and Water Environment Protection of Huai'an City, Huai'an Sub Center of the Institute of Hydrobiology, Chinese Academy of Sciences ; Key Laboratory of Fishery Sustainable Development and Water Environment Protection of Huai'an City, Huai'an Sub Center of the Institute of Hydrobiology, Chinese Academy of Sciences ; Key Laboratory of Fishery Sustainable Development and Water Environment Protection of Huai'an City, Huai'an Sub Center of the Institute of Hydrobiology, Chinese Academy of Sciences ; Key Laboratory of Fishery Sustainable Development and Water Environment Protection of Huai'an City, Huai'an Sub Center of the Institute of Hydrobiology, Chinese Academy of Sciences ; Key Laboratory of Fishery Sustainable Development and Water Environment Protection of Huai'an City, Huai'an Sub Center of the Institute of Hydrobiology, Chinese Academy of Sciences ; Key Laboratory of Fishery Sustainable Development and Water Environment Protection of Huai'an City, Huai'an Sub Center of the Institute of Hydrobiology, Chinese Academy of Sciences ; Key Laboratory of Fishery Sustainable Development and Water Environment Protection of Huai'an City, Huai'an Sub Center of the Institute of Hydrobiology, Chinese Academy of Sciences ; Key Laboratory of Fishery Sustainable Development and Water Environment Protection of Huai'an City, Huai'an Sub Center of the Institute of Hydrobiology, Chinese Academy of Sciences ; Start-up Funds of Scientific Research from Huaiyin Normal University ; Start-up Funds of Scientific Research from Huaiyin Normal University ; Start-up Funds of Scientific Research from Huaiyin Normal University ; Start-up Funds of Scientific Research from Huaiyin Normal University ; Start-up Funds of Scientific Research from Huaiyin Normal University ; Start-up Funds of Scientific Research from Huaiyin Normal University ; Start-up Funds of Scientific Research from Huaiyin Normal University ; Start-up Funds of Scientific Research from Huaiyin Normal University ; Key Laboratory of Fishery Sustainable Development and Water Environment Protection of Huai'an City, Huai'an Sub Center of the Institute of Hydrobiology, Chinese Academy of Sciences ; Key Laboratory of Fishery Sustainable Development and Water Environment Protection of Huai'an City, Huai'an Sub Center of the Institute of Hydrobiology, Chinese Academy of Sciences ; 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内容类型	期刊论文
源URL	[http://ir.ihb.ac.cn/handle/342005/34430]
专题	水生生物研究所_其他_期刊论文
通讯作者	Zhu, Chuankun
作者单位	1.Huaiyin Normal Univ, Jiangsu Engn Lab Breeding Special Aquat Organisms, Huaian, Jiangsu, Peoples R China 2.Huaiyin Normal Univ, Jiangsu Collaborat Innovat Ctr Reg Modern Agr & E, Huaian, Peoples R China 3.Chinese Acad Sci, Inst Hydrobiol, Huaian Sub Ctr, Key Lab Fishery Sustainable Dev & Water Environm, Huaian, Peoples R China
推荐引用方式 GB/T 7714	Zhu, Chuankun,Zhang, Lei,Ding, Huaiyu,et al. Transcriptome-wide identification and characterization of the Sox gene family and microsatellites for Corbicula fluminea[J]. PEERJ,2019,7(1):25.
APA	Zhu, Chuankun,Zhang, Lei,Ding, Huaiyu,&Pan, Zhengjun.(2019).Transcriptome-wide identification and characterization of the Sox gene family and microsatellites for Corbicula fluminea.PEERJ,7(1),25.
MLA	Zhu, Chuankun,et al."Transcriptome-wide identification and characterization of the Sox gene family and microsatellites for Corbicula fluminea".PEERJ 7.1(2019):25.