Aeromonas salmonicida subsp salmonicida strains isolated from Chinese freshwater fish contain a novel genomic island and possible regional-specific mobile genetic elements profiles | |
Long, Meng1,2; Nielsen, Tue K.3; Leisner, Jorgen J.4; Hansen, Lars H.3; Shen, Zhi X.5; Zhang, Qian Q.1; Li, Aihua1 | |
刊名 | FEMS MICROBIOLOGY LETTERS
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2016-09-01 | |
卷号 | 363期号:17页码:8 |
关键词 | China Aeromonas salmonicida subsp salmonicida genome sequencing genomic island AsaGEI2c Tn7 transposon |
ISSN号 | 0378-1097 |
DOI | 10.1093/femsle/fnw190 |
英文摘要 | Two strains of Aeromonas salmonicida, YK and BG, were isolated from largemouth bronze gudgeon and northern whitefish in China, and identified as A. salmonicida subsp. salmonicida based on phylogenetic analysis of vapA and 16S rRNA gene sequences. YK and BG originated from freshwater fish, one of which belonged to the cyprinid family, and the strains showed a difference in virulence. Subsequently, we performed whole genome sequencing of the strains, and comparison of their genomic sequences to the genome of the A449 reference strain revealed various genomic rearrangements, including a new variant of the genomic island AsaGEI in BG, designated as AsaGEI2c. This is the first report on a GEI of A. salmonicida strain from China. Furthermore, both YK and BG strains contained a Tn7 transposon inserted at the same position in the chromosome. Finally, IS-dependent rearrangements on pAsa5 are deemed likely to have occurred, with omission of the resD gene in both strains as well as omission of genes related to the IncF conjugal transfer system in the YK isolate. This study demonstrates that A. salmonicida subsp. salmonicida can infect non-salmonids (cyprinids) in addition to salmonids, and that AsaGEI2c might be useful as a geographical indicator of Chinese A. salmonicida subsp. salmonicida isolates. |
资助项目 | FEBL[2011FBZ26] ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province[KLPA2013-02] ; Jiangsu Provincial Department of Science and Technology[D2015-11] ; Natural Science Foundation of China[30670112] ; Natural Science Foundation of China[31070112] |
WOS关键词 | III EFFECTOR PROTEIN ; INSERTION SEQUENCES ; ULCERATIVE DISEASE ; EVOLUTION ; PLASMID ; DIVERSITY ; PATHOGEN ; GENERATION ; RESISTANCE ; INFECTION |
WOS研究方向 | Microbiology |
语种 | 英语 |
出版者 | OXFORD UNIV PRESS |
WOS记录号 | WOS:000388377700012 |
资助机构 | FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; 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Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; FEBL ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Key Laboratory of Plateau Aquatic Organism and Environment of Qinghai Province ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Jiangsu Provincial Department of Science and Technology ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China |
内容类型 | 期刊论文 |
源URL | [http://ir.ihb.ac.cn/handle/342005/34061] ![]() |
专题 | 水生生物研究所_鱼类生物学及渔业生物技术研究中心_期刊论文 |
通讯作者 | Li, Aihua |
作者单位 | 1.Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, 7 South Rd East Lake, Wuhan 430072, Peoples R China 2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 3.Aarhus Univ, Dept Environm Sci, Sect Environm Microbiol & Biotechnol, Frederiksborgvej 399, DK-4000 Roskilde, Denmark 4.Univ Copenhagen, Fac Hlth & Med Sci, Dept Vet Dis Biol, Gronnegardsvej 15, DK-1870 Frederiksberg C, Denmark 5.Qinghai Prov Fishery Environm Monitoring Ctr, Xining 810000, Peoples R China |
推荐引用方式 GB/T 7714 | Long, Meng,Nielsen, Tue K.,Leisner, Jorgen J.,et al. Aeromonas salmonicida subsp salmonicida strains isolated from Chinese freshwater fish contain a novel genomic island and possible regional-specific mobile genetic elements profiles[J]. FEMS MICROBIOLOGY LETTERS,2016,363(17):8. |
APA | Long, Meng.,Nielsen, Tue K..,Leisner, Jorgen J..,Hansen, Lars H..,Shen, Zhi X..,...&Li, Aihua.(2016).Aeromonas salmonicida subsp salmonicida strains isolated from Chinese freshwater fish contain a novel genomic island and possible regional-specific mobile genetic elements profiles.FEMS MICROBIOLOGY LETTERS,363(17),8. |
MLA | Long, Meng,et al."Aeromonas salmonicida subsp salmonicida strains isolated from Chinese freshwater fish contain a novel genomic island and possible regional-specific mobile genetic elements profiles".FEMS MICROBIOLOGY LETTERS 363.17(2016):8. |
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