Trends on Methods for Prediction of Tandem Mass Spectra of Peptides

doi:10.16476/j.pibb.2018.0201

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	Trends on Methods for Prediction of Tandem Mass Spectra of Peptides
	Huang Yun-You 2,4; Zeng Wen-Feng 2,3; Kong De-Fei 2,4; Hao Tian-Shu 2,4; Zhang Zhi-Fei 1; Gao Wan-Ling 2,4; Ren Rui 2,4; Zhou Xie-Xuan 2,4; Zhan Jian-Feng 2,4
刊名	PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS
	2019-02-01
卷号	46 期号:2 页码:169-180
关键词	mass spectrometry proteomics mobile proton model machine learning deep learning
ISSN号	1000-3282
DOI	10.16476/j.pibb.2018.0201
英文摘要	Tandem mass spectrometry (MS/MS)-based proteomics has become one of the most important tools in bioscience, and researchers now pay much attention to the prediction of MS/MS spectra for protein identification and quantification. With the accumulation of massive high-quality spectrum data and the development of computing technology, quite a few new methods were emerged to solve this problem. These methods can be divided into two catagories: mobile proton model-based methods, such as MassAnalyzer and MS-Simulator; and machine learning-based methods, including traditional machine learning and deep learning, such as PeptideART, MS2PIP, MS2PBPI and pDeep. In this paper, we investigated a wide variety of corresponding methods, and briefly pointed out the deficiencies of existing software tools, and suggested the future work.
资助项目	National Key Research Program of China[2016YFB1000605]
WOS研究方向	Biochemistry & Molecular Biology ; Biophysics
语种	英语
出版者	CHINESE ACAD SCIENCES, INST BIOPHYSICS
WOS记录号	WOS:000459641700008
内容类型	期刊论文
源URL	[http://119.78.100.204/handle/2XEOYT63/3420]
专题	中国科学院计算技术研究所期刊论文_英文
通讯作者	Zhang Zhi-Fei; Zhan Jian-Feng
作者单位	1.Capital Med Univ, Dept Physiol & Pathophysiol, Beijing 100069, Peoples R China 2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 3.Chinese Acad Sci, ICT, Key Lab Intelligent Informat Proc, Beijing 100190, Peoples R China 4.Chinese Acad Sci, ICT, State Key Lab Comp Architecture, Beijing 100190, Peoples R China
推荐引用方式 GB/T 7714	Huang Yun-You,Zeng Wen-Feng,Kong De-Fei,et al. Trends on Methods for Prediction of Tandem Mass Spectra of Peptides[J]. PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS,2019,46(2):169-180.
APA	Huang Yun-You.,Zeng Wen-Feng.,Kong De-Fei.,Hao Tian-Shu.,Zhang Zhi-Fei.,...&Zhan Jian-Feng.(2019).Trends on Methods for Prediction of Tandem Mass Spectra of Peptides.PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS,46(2),169-180.
MLA	Huang Yun-You,et al."Trends on Methods for Prediction of Tandem Mass Spectra of Peptides".PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS 46.2(2019):169-180.