A brief introduction to web-based genome browsers | |
Wang, Jun ; Kong, Lei ; Gao, Ge ; Luo, Jingchu | |
刊名 | briefings in bioinformatics
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2013 | |
关键词 | genome browsers genomic databases visualization data retrieval and analysis customization BIOLOGICAL DATA DATABASE RICE EPIGENOME RESOURCE PLATFORM OSSPL14 BIOMART |
DOI | 10.1093/bib/bbs029 |
英文摘要 | Genome browser provides a graphical interface for users to browse, search, retrieve and analyze genomic sequence and annotation data. Web-based genome browsers can be classified into general genome browsers with multiple species and species-specific genome browsers. In this review, we attempt to give an overview for the main functions and features of web-based genome browsers, covering data visualization, retrieval, analysis and customization. To give a brief introduction to the multiple-species genome browser, we describe the user interface and main functions of the Ensembl and UCSC genome browsers using the human alpha-globin gene cluster as an example. We further use the MSU and the Rice-Map genome browsers to show some special features of species-specific genome browser, taking a rice transcription factor gene OsSPL14 as an example.; http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000316694700002&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=8e1609b174ce4e31116a60747a720701 ; Biochemical Research Methods; Mathematical & Computational Biology; SCI(E); PubMed; 12; EDITORIAL MATERIAL; 2,SI; 131-143; 14 |
语种 | 英语 |
内容类型 | 期刊论文 |
源URL | [http://ir.pku.edu.cn/handle/20.500.11897/319945] ![]() |
专题 | 生命科学学院 |
推荐引用方式 GB/T 7714 | Wang, Jun,Kong, Lei,Gao, Ge,et al. A brief introduction to web-based genome browsers[J]. briefings in bioinformatics,2013. |
APA | Wang, Jun,Kong, Lei,Gao, Ge,&Luo, Jingchu.(2013).A brief introduction to web-based genome browsers.briefings in bioinformatics. |
MLA | Wang, Jun,et al."A brief introduction to web-based genome browsers".briefings in bioinformatics (2013). |
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