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A weak second order tau-leaping method for chemical kinetic systems
Hu, Yucheng ; Li, Tiejun ; Min, Bin
2011
关键词STOCHASTIC SIMULATION REACTING SYSTEMS GENE-EXPRESSION STABILITY SCHEMES
英文摘要Recently Anderson and Mattingly [Comm. Math. Sci. 9, 301 (2011)] proposed a method which can solve chemical Langevin equations with weak second order accuracy. We extend their work to the discrete chemical jump processes. With slight modification, the method can also solve discrete chemical kinetic systems with weak second order accuracy in the large volume scaling. Especially, this method achieves higher order accuracy than both the Euler tau-leaping and mid-point tau-leaping methods in the sense that the local truncation error for the covariance is of order tau(3)V(-1) when tau = V(-beta) (0 < beta < 1) and the system size V -> infinity. We present the convergence analysis, numerical stability analysis, and numerical examples. Overall, in the authors' opinion, the new method is easy to be implemented and good in performance, which is a good candidate among the highly accurate tau-leaping type schemes for discrete chemical reaction systems. (C) 2011 American Institute of Physics. [doi: 10.1063/1.3609119]; http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000292776000016&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=8e1609b174ce4e31116a60747a720701 ; Physics, Atomic, Molecular & Chemical; SCI(E); EI; PubMed; 8; ARTICLE; 2; 024113; 135
语种英语
出处EI ; PubMed ; SCI
出版者journal of chemical physics
内容类型其他
源URL[http://hdl.handle.net/20.500.11897/193311]  
专题数学科学学院
推荐引用方式
GB/T 7714
Hu, Yucheng,Li, Tiejun,Min, Bin. A weak second order tau-leaping method for chemical kinetic systems. 2011-01-01.
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