Assessment of genetic variation among wild Alpinia nigra (Zingiberaceae) population: an approach based on molecular phylogeny

doi:10.1007/s11033-018-4458-3

CORC > 昆明植物研究所 > 中国科学院昆明植物研究所 > 中国科学院东亚植物多样性与生物地理学重点实验室

	Assessment of genetic variation among wild Alpinia nigra (Zingiberaceae) population: an approach based on molecular phylogeny
	Basak, Supriyo 1,2; Chakrabartty, Ishani 1; Hedaoo, Vivek 1; Shelke, Rahul G.1; Rangan, Latha 1
刊名	MOLECULAR BIOLOGY REPORTS
	2019-02-01
卷号	46 期号:1 页码:177-189
关键词	Alpinia nigra Genetic diversity DNA barcodes Habitat fragmentation ISSR marker Population differentiation RAPD marker
ISSN号	0301-4851
DOI	10.1007/s11033-018-4458-3
通讯作者	Rangan, Latha(latha_rangan@yahoo.com)
英文摘要	Genetic structure was evaluated among wild Alpinia nigra (Gaertn.) B.L. Burtt, populations. The information of genetic relatedness was developed using random amplified polymorphic DNA (RAPD), inter-simple sequence repeat (ISSR) and barcoding loci (plastid and mitochondrial). The order (high to low) of Shannon's information index (I) and Nei's gene diversity (h) from the populations was: "IIT Guwahati" > "Amingaon" > "Saraighat". Genetic diversity decreased and genetic differentiation increased among the three populations. We observed no isolation by distance thus lower amount of gene flow was observed. Narrow range of genetic distance among the three populations and appearance of two distinct clusters strengthened the geographical isolation in dendrogram and principal component analysis. No mutation among the three populations was observed for seven plastid loci and two mitochondrial tested suggesting the taxonomic homogeneity. The phylogeny based on nine barcoding loci supported our observation that individuals of IIT Guwahati were partially isolated from the outside populations. Our study will provide a backbone for developing strategies to resist habitat fragmentation of Zingiberaceous plants.
WOS研究方向	Biochemistry & Molecular Biology
语种	英语
WOS记录号	WOS:000462022300020
内容类型	期刊论文
源URL	[http://ir.kib.ac.cn/handle/151853/67701]
专题	昆明植物研究所_中国科学院东亚植物多样性与生物地理学重点实验室
通讯作者	Rangan, Latha
作者单位	1.Indian Inst Technol Guwahati, Dept Biosci & Bioengn, Gauhati 781039, Assam, India 2.Chinese Acad Sci, Kunming Inst Bot, Key Lab Plant Divers & Biogeog East Asia, Kunming 650201, Yunnan, Peoples R China
推荐引用方式 GB/T 7714	Basak, Supriyo,Chakrabartty, Ishani,Hedaoo, Vivek,et al. Assessment of genetic variation among wild Alpinia nigra (Zingiberaceae) population: an approach based on molecular phylogeny[J]. MOLECULAR BIOLOGY REPORTS,2019,46(1):177-189.
APA	Basak, Supriyo,Chakrabartty, Ishani,Hedaoo, Vivek,Shelke, Rahul G.,&Rangan, Latha.(2019).Assessment of genetic variation among wild Alpinia nigra (Zingiberaceae) population: an approach based on molecular phylogeny.MOLECULAR BIOLOGY REPORTS,46(1),177-189.
MLA	Basak, Supriyo,et al."Assessment of genetic variation among wild Alpinia nigra (Zingiberaceae) population: an approach based on molecular phylogeny".MOLECULAR BIOLOGY REPORTS 46.1(2019):177-189.