| Anticode: a natural sense-antisense transcripts database | |
| Yin, Yifei; Zhao, Yi; Wang, Jie; Liu, Changning; Chen, Shuguang; Chen, Runsheng; Zhao, Haitao | |
| 刊名 | Bmc bioinformatics
 |
| 2007-08-30 | |
| 卷号 | 8页码:5 |
| ISSN号 | 1471-2105 |
| DOI | 10.1186/1471-2105-8-319 |
| 通讯作者 | Chen, runsheng(crs@sun5.ibp.ac.cn) |
| 英文摘要 | Background: natural antisense transcripts ( nats) are endogenous rna molecules that exhibit partial or complete complementarity to other rnas, and that may contribute to the regulation of molecular functions at various levels. in recent years, large-scale nat screens in several model organisms have produced much data, but there is no database to assemble all these data. anticode intends to function as an integrated nat database for this purpose. results: this release of anticode contains more than 30,000 non-redundant natural sense-antisense transcript pairs from 12 eukaryotic model organisms. in order to provide an integrated nat research platform, efficient browser, search and blast functions have been included to enable users to easily access information through parameters such as species, accession number, overlapping patterns, coding potential etc. in addition to the collected information, anticode also introduces a simple classification system to facilitate the study of natural antisense transcripts. conclusion: though a few similar databases also dealing with nats have appeared lately, anticode is the most comprehensive among these, comprising almost all currently detected nat pairs. |
| WOS关键词 | GENE-EXPRESSION ; IMMUNODEFICIENCY-VIRUS ; ARABIDOPSIS-THALIANA ; HUMAN GENOME ; CELL-LINES ; RNA ; IDENTIFICATION ; INTERFERENCE ; PREDICTION ; TISSUES |
| WOS研究方向 | Biochemistry & Molecular Biology ; Biotechnology & Applied Microbiology ; Mathematical & Computational Biology |
| WOS类目 | Biochemical Research Methods ; Biotechnology & Applied Microbiology ; Mathematical & Computational Biology |
| 语种 | 英语 |
| 出版者 | BIOMED CENTRAL LTD |
| WOS记录号 | WOS:000249840700001 |
| 内容类型 | 期刊论文 |
| URI标识 | http://www.corc.org.cn/handle/1471x/2380514 |
| 专题 | 中国科学院大学 |
| 通讯作者 | Chen, Runsheng |
| 作者单位 | 1.Chinese Acad Med Sci, Peking Union Med Coll Hosp, Dept Liver Surg, Beijing 100730, Peoples R China 2.Chinese Acad Sci, Inst Comp Technol, Bioinformat Grp, Beijing 100080, Peoples R China 3.Chinese Acad Sci, Inst Biophys, Bioinformat Lab, Beijing 100101, Peoples R China 4.Chinese Acad Sci, Grad Sch, Beijing 100080, Peoples R China |
| 推荐引用方式 GB/T 7714 | Yin, Yifei,Zhao, Yi,Wang, Jie,et al. Anticode: a natural sense-antisense transcripts database[J]. Bmc bioinformatics,2007,8:5. |
| APA | Yin, Yifei.,Zhao, Yi.,Wang, Jie.,Liu, Changning.,Chen, Shuguang.,...&Zhao, Haitao.(2007).Anticode: a natural sense-antisense transcripts database.Bmc bioinformatics,8,5. |
| MLA | Yin, Yifei,et al."Anticode: a natural sense-antisense transcripts database".Bmc bioinformatics 8(2007):5. |
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