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	3dscapecs: application of three dimensional, parallel, dynamic network visualization in cytoscape
	Wang,Qi1,4; Tang,Biao2; Song,Lifu3; Ren,Biao1,4; Liang,Qun4; Xie,Feng1; Zhuo,Ying1; Liu,Xueting1; Zhang,Lixin1
刊名	Bmc bioinformatics
	2013-11-14
卷号	14期号:1
ISSN号	1471-2105
DOI	10.1186/1471-2105-14-322
通讯作者	Liu,xueting(liuxueting_cn@hotmail.com) ; Zhang,lixin(zhanglixin@im.ac.cn)
英文摘要	Abstractbackgroundthe exponential growth of gigantic biological data from various sources, such as protein-protein interaction (ppi), genome sequences scaffolding, mass spectrometry (ms) molecular networking and metabolic flux, demands an efficient way for better visualization and interpretation beyond the conventional, two-dimensional visualization tools.resultswe developed a 3d cytoscape client/server (3dscapecs) plugin, which adopted cytoscape in interpreting different types of data, and ubigraph for three-dimensional visualization. the extra dimension is useful in accommodating, visualizing, and distinguishing large-scale networks with multiple crossed connections in five case studies.conclusionsevaluation on several experimental data using 3dscapecs and its special features, including multilevel graph layout, time-course data animation, and parallel visualization has proven its usefulness in visualizing complex data and help to make insightful conclusions.
语种	英语
出版者	BioMed Central
WOS记录号	BMC:10.1186/1471-2105-14-322
内容类型	期刊论文
URI标识	http://www.corc.org.cn/handle/1471x/2374287
专题	中国科学院大学
通讯作者	Liu,Xueting; Zhang,Lixin
作者单位	1.Institute of Microbiology, Chinese Academy of Sciences; Chinese Academy of Sciences Key Laboratory of Pathogenic Microbiology and Immunology 2.School of Life Sciences, Fudan University; State Key Laboratory of Genetic Engineering, Department of Microbiology 3.Hamburg University of Technology; Institute of Bioprocess and Biosystems Engineering 4.University of Chinese Academy of Sciences
推荐引用方式 GB/T 7714	Wang,Qi,Tang,Biao,Song,Lifu,et al. 3dscapecs: application of three dimensional, parallel, dynamic network visualization in cytoscape[J]. Bmc bioinformatics,2013,14(1).
APA	Wang,Qi.,Tang,Biao.,Song,Lifu.,Ren,Biao.,Liang,Qun.,...&Zhang,Lixin.(2013).3dscapecs: application of three dimensional, parallel, dynamic network visualization in cytoscape.Bmc bioinformatics,14(1).
MLA	Wang,Qi,et al."3dscapecs: application of three dimensional, parallel, dynamic network visualization in cytoscape".Bmc bioinformatics 14.1(2013).

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