Cloning and sequence analysis of the partial sequence of the rbcL from Bryopsis hypnoides

CORC > 海洋研究所 > 中国科学院海洋研究所 > 实验海洋生物学重点实验室

	Cloning and sequence analysis of the partial sequence of the rbcL from Bryopsis hypnoides
	Tian, C ; Wang, GC ; Ye, NH ; Zhang, BY ; Fan, XL ; Zeng, CK
刊名	ACTA OCEANOLOGICA SINICA
	2005
卷号	24 期号:5 页码:150-161
关键词	Rbcl Bryopsis Hypnoides Sequence Analysis Phylogenetic Analysis Codon Preference
ISSN号	0253-505X
文献子类	Article
英文摘要	The partial sequence of the rbcL from Bryopsis hypnoides, including the sequences of the upstream, extron and partial intron, was amplified by PCR and their sequences were determined. With Spinacia oleracea as the outgroup, neighbor-joining method and maximum parsimony method were used respectively to build phylogenetic trees according to the rbcL exon sequence among 13 species that were the typical species of six phyla. Two kinds of trees showed clearly that there were two groups among those species, the green lineage and the non-green lineage. And the relationships of algae in the green lineage were similar in the two trees but those in the non-green lineage were not consistent. Analysis of codon preference indicated that the codon preference of the rbcL exon of Bryopsis hypnoides distinctly differed from that of the relevant sequence of photosynthetic bacteria.; The partial sequence of the rbcL from Bryopsis hypnoides, including the sequences of the upstream, extron and partial intron, was amplified by PCR and their sequences were determined. With Spinacia oleracea as the outgroup, neighbor-joining method and maximum parsimony method were used respectively to build phylogenetic trees according to the rbcL exon sequence among 13 species that were the typical species of six phyla. Two kinds of trees showed clearly that there were two groups among those species, the green lineage and the non-green lineage. And the relationships of algae in the green lineage were similar in the two trees but those in the non-green lineage were not consistent. Analysis of codon preference indicated that the codon preference of the rbcL exon of Bryopsis hypnoides distinctly differed from that of the relevant sequence of photosynthetic bacteria.
学科主题	Oceanography
语种	英语
WOS记录号	WOS:000232432700018
公开日期	2010-12-22
内容类型	期刊论文
源URL	[http://ir.qdio.ac.cn/handle/337002/3133]
专题	海洋研究所_实验海洋生物学重点实验室
作者单位	1.Chinese Acad Sci, Inst Oceanol, Qingdao 266071, Peoples R China 2.Chinese Acad Sci, Grad Sch, Beijing 100039, Peoples R China 3.Chinese Acad Fishery Sci, Yellow Sea Fisheries Res Inst, Qingdao 266071, Peoples R China
推荐引用方式 GB/T 7714	Tian, C,Wang, GC,Ye, NH,et al. Cloning and sequence analysis of the partial sequence of the rbcL from Bryopsis hypnoides[J]. ACTA OCEANOLOGICA SINICA,2005,24(5):150-161.
APA	Tian, C,Wang, GC,Ye, NH,Zhang, BY,Fan, XL,&Zeng, CK.(2005).Cloning and sequence analysis of the partial sequence of the rbcL from Bryopsis hypnoides.ACTA OCEANOLOGICA SINICA,24(5),150-161.
MLA	Tian, C,et al."Cloning and sequence analysis of the partial sequence of the rbcL from Bryopsis hypnoides".ACTA OCEANOLOGICA SINICA 24.5(2005):150-161.