Soil bacterial quantification approaches coupling with relative abundances reflecting the changes of taxa

CORC > 生态环境研究中心 > 中国科学院生态环境研究中心 > 中国科学院环境生物技术重点实验室

	Soil bacterial quantification approaches coupling with relative abundances reflecting the changes of taxa
	Yin, Huaqun; Li, Hui; Liang, Yuting; Cai, Weiwei; Wang, Shang; Feng, Kai; Li, Shuzhen; Qu, Yuanyuan; Zhang, Zhaojing; Deng, Ye
刊名	SCIENTIFIC REPORTS
	2017-07-06
卷号	7 期号:0 页码:-
英文摘要	Understanding the abundance change of certain bacterial taxa is quite important for the study of soil microbiology. However, the observed differences of relative abundances by high-throughput techniques may not accurately reflect those of the actual taxon abundances. This study investigated whether soil microbial abundances coupling with microbial quantities can be more informative in describing the microbial population distribution under different locations. We analyzed relative abundances of the major species in soil microbial communities from Beijing and Tibet grasslands by using 16 S rRNA high-throughput sequencing technique, and quantified the absolute bacterial cell numbers directly or indirectly by multiple culture-independent measurements, including adenosine tri-phosphate (ATP), flow cytometry (FCM), quantitative real-time PCR (qPCR), phospholipid fatty acids (PLFA) and microbial biomass Carbon (MBC). By comparison of the relative abundance and the estimated absolute abundances (EAA) of the major components in soil microbial communities, several dominant phyla, including Actinobacteria, Bacteroidetes, Verrucomicrobia, Chloroflexi, Gemmatimonates and Planctomycetes, showed significantly different trends. These results indicated that the change in EAA might be more informative in describing the dynamics of a population in a community. Further studies of soil microbes should combine the quantification and relative abundances of the microbial communities for the comparisons among various locations.
内容类型	期刊论文
源URL	[http://ir.rcees.ac.cn/handle/311016/39651]
专题	生态环境研究中心_中国科学院环境生物技术重点实验室
推荐引用方式 GB/T 7714	Yin, Huaqun,Li, Hui,Liang, Yuting,et al. Soil bacterial quantification approaches coupling with relative abundances reflecting the changes of taxa[J]. SCIENTIFIC REPORTS,2017,7(0):-.
APA	Yin, Huaqun.,Li, Hui.,Liang, Yuting.,Cai, Weiwei.,Wang, Shang.,...&Xu, Meiying.(2017).Soil bacterial quantification approaches coupling with relative abundances reflecting the changes of taxa.SCIENTIFIC REPORTS,7(0),-.
MLA	Yin, Huaqun,et al."Soil bacterial quantification approaches coupling with relative abundances reflecting the changes of taxa".SCIENTIFIC REPORTS 7.0(2017):-.