The complete chloroplast genome sequence of Dodonaea viscosa: comparative and phylogenetic analyses

doi:10.1007/s10709-017-0003-x

CORC > 武汉植物园 > 中国科学院武汉植物园

	The complete chloroplast genome sequence of Dodonaea viscosa: comparative and phylogenetic analyses
	Saina, Josphat K.1,2,3; Gichira, Andrew W.1,2,3; Li, Zhi-Zhong 1,2; Hu, Guang-Wan 1,3; Wang, Qing-Feng 1,3; Liao, Kuo 1,3
刊名	GENETICA
	2018-02-01
卷号	146 期号:1 页码:101-113
关键词	Chloroplast genome Dodonaea viscosa Phylogenetic analysis Sapindaceae
ISSN号	0016-6707
DOI	10.1007/s10709-017-0003-x
英文摘要	The plant chloroplast (cp) genome is a highly conserved structure which is beneficial for evolution and systematic research. Currently, numerous complete cp genome sequences have been reported due to high throughput sequencing technology. However, there is no complete chloroplast genome of genus Dodonaea that has been reported before. To better understand the molecular basis of Dodonaea viscosa chloroplast, we used Illumina sequencing technology to sequence its complete genome. The whole length of the cp genome is 159,375 base pairs (bp), with a pair of inverted repeats (IRs) of 27,099 bp separated by a large single copy (LSC) 87,204 bp, and small single copy (SSC) 17,972 bp. The annotation analysis revealed a total of 115 unique genes of which 81 were protein coding, 30 tRNA, and four ribosomal RNA genes. Comparative genome analysis with other closely related Sapindaceae members showed conserved gene order in the inverted and single copy regions. Phylogenetic analysis clustered D. viscosa with other species of Sapindaceae with strong bootstrap support. Finally, a total of 249 SSRs were detected. Moreover, a comparison of the synonymous (Ks) and nonsynonymous (Ka) substitution rates in D. viscosa showed very low values. The availability of cp genome reported here provides a valuable genetic resource for comprehensive further studies in genetic variation, taxonomy and phylogenetic evolution of Sapindaceae family. In addition, SSR markers detected will be used in further phylogeographic and population structure studies of the species in this genus.
资助项目	Sino-Africa Joint Research Center[Y323771W07] ; Sino-Africa Joint Research Center[SAJC201322] ; Special Funds for the Young Scholars of Taxonomy of Chinese Academy of Sciences[ZSBR-013]
WOS研究方向	Genetics & Heredity
语种	英语
出版者	SPRINGER
WOS记录号	WOS:000422861000009
内容类型	期刊论文
源URL	[http://202.127.146.157/handle/2RYDP1HH/4509]
专题	中国科学院武汉植物园
通讯作者	Wang, Qing-Feng; Liao, Kuo
作者单位	1.Chinese Acad Sci, Wuhan Bot Garden, Key Lab Aquat Bot & Watershed Ecol, Wuhan 430074, Hubei, Peoples R China 2.Univ Chinese Acad Sci, Beijing, Peoples R China 3.Chinese Acad Sci, Sinoafrican Joint Res Ctr, Wuhan, Hubei, Peoples R China
推荐引用方式 GB/T 7714	Saina, Josphat K.,Gichira, Andrew W.,Li, Zhi-Zhong,et al. The complete chloroplast genome sequence of Dodonaea viscosa: comparative and phylogenetic analyses[J]. GENETICA,2018,146(1):101-113.
APA	Saina, Josphat K.,Gichira, Andrew W.,Li, Zhi-Zhong,Hu, Guang-Wan,Wang, Qing-Feng,&Liao, Kuo.(2018).The complete chloroplast genome sequence of Dodonaea viscosa: comparative and phylogenetic analyses.GENETICA,146(1),101-113.
MLA	Saina, Josphat K.,et al."The complete chloroplast genome sequence of Dodonaea viscosa: comparative and phylogenetic analyses".GENETICA 146.1(2018):101-113.