Characterization of the complete plastid genome of a Chinese endemic species Carya kweichowensis | |
Ye, Linjiang1,2,3; Fu, Chaonan2,3; Wang, Yuehua1; Liu, Jie2; Gao, Lianming2 | |
刊名 | MITOCHONDRIAL DNA PART B-RESOURCES |
2018 | |
卷号 | 3期号:2页码:492-493 |
关键词 | Carya Kweichowensis Conservation Genetics Endangered Species Genome Skimming Plastid Genome |
ISSN号 | 2380-2359 |
DOI | 10.1080/23802359.2018.1464414 |
英文摘要 | Carya kweichowensis is an importantly economic tree species in Juglandaceae, which is critically endangered and endemic to Guizhou, China. The plastid genome of C. kweichowensis was assembled and characterized based on Illumina pair-end sequencing data using genome skimming approach. The complete plastid genome is 175,313 bp in length, with a GC content of 35.8%. It is a typical quadripartite structure, containing a large single copy (LSC) region of 89,858 bp and a small single copy (SSC) region of 3569bp separated by a pair of extremely extensive inverted repeats (IRs) of 40,943 bp. A total of 142 genes were annotated, including 94 protein-coding genes, 40 tRNA genes, and eight rRNA genes. A maximum likelihood (ML) phylogenetic tree on plastid genomes revealed that C. kweichowensis is close to Annamocarya sinensis. The newly characterized complete plastid genome of C. kweichowensis will provide essential data for further studies of this endangered species. |
资助项目 | National Natural Science Foundation of China[31770367] ; Large-Scale Scientific Facilities of the Chinese Academy of Sciences[2017-LSF-GBOWS-02] ; Science and Technology Innovation Program of Forestry Department of Yunnan Province[[2016]cx03] ; National Academy of Science Alliance Biodiversity Branch[Y62C0111Q1] ; Natural Science Foundation of Yunnan[2017FB027] |
WOS研究方向 | Genetics & Heredity |
语种 | 英语 |
出版者 | TAYLOR & FRANCIS LTD |
WOS记录号 | WOS:000445298500012 |
资助机构 | National Natural Science Foundation of China ; Large-Scale Scientific Facilities of the Chinese Academy of Sciences ; Science and Technology Innovation Program of Forestry Department of Yunnan Province ; National Academy of Science Alliance Biodiversity Branch ; Natural Science Foundation of Yunnan |
内容类型 | 期刊论文 |
源URL | [http://ir.kib.ac.cn/handle/151853/62556] |
专题 | 昆明植物研究所_中国科学院东亚植物多样性与生物地理学重点实验室 |
通讯作者 | Liu, Jie; Gao, Lianming |
作者单位 | 1.Yunnan Univ, Sch Life Sci, Kunming, Yunnan, Peoples R China 2.Chinese Acad Sci, Kunming Inst Bot, Key Lab Plant Divers & Biogeog East Asia, Kunming, Yunnan, Peoples R China 3.Univ Chinese Acad Sci, Beijing, Peoples R China |
推荐引用方式 GB/T 7714 | Ye, Linjiang,Fu, Chaonan,Wang, Yuehua,et al. Characterization of the complete plastid genome of a Chinese endemic species Carya kweichowensis[J]. MITOCHONDRIAL DNA PART B-RESOURCES,2018,3(2):492-493. |
APA | Ye, Linjiang,Fu, Chaonan,Wang, Yuehua,Liu, Jie,&Gao, Lianming.(2018).Characterization of the complete plastid genome of a Chinese endemic species Carya kweichowensis.MITOCHONDRIAL DNA PART B-RESOURCES,3(2),492-493. |
MLA | Ye, Linjiang,et al."Characterization of the complete plastid genome of a Chinese endemic species Carya kweichowensis".MITOCHONDRIAL DNA PART B-RESOURCES 3.2(2018):492-493. |
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