A genome-wide microsatellite polymorphism database for the Indica and Japonica rice | |
Zhang, Zhonghua; Deng, Yajun; Tan, Jun; Hu, Songnian; Yu, Jun; Xue, Qingzhong | |
刊名 | DNA RESEARCH
![]() |
2007 | |
卷号 | 14期号:1页码:37-45 |
关键词 | polymorphism microsatellite or MS database whole-genome sequences rice |
ISSN号 | 1340-2838 |
DOI | 10.1093/dnares/dsm005 |
通讯作者 | Zhang, Zhonghua |
英文摘要 | Microsatellite (MS) polyinorphism is an important source of genetic diversity, providing support for map-based cloning and molecular breeding. We have developed a new database that contains 52 845 polyniorphic MS loci between indica and japonica, composed of ample Class II MS markers, and integrated IS 828 MS loci from IRGSP and genetic markers from RGP. Based on genetic marker positions on the rice genome (http://rise.genomics.org.cn/ rice2/index.jsp), we determined the approximate genetic distances of these MS loci and validated 100 randomly selected markers experimentally with 90% success rate. In addition, we recorded polymorphic MS positions in indica, cv. 9311 that is the most important paternal parent of the two-line hybrid rice in China. Our database will undoubtedly facilitate the application of MS markers in genetic researches and marker-assisted breeding. The data set is freely available from www.wigs.zju.edu.cn/achievrnerit/polySSR. |
学科主题 | Genetics & Heredity ; GENETICS & HEREDITY |
语种 | 英语 |
出版者 | OXFORD UNIV PRESS |
WOS记录号 | WOS:000248042500004 |
内容类型 | 期刊论文 |
源URL | [http://111.203.20.206/handle/2HMLN22E/101237] ![]() |
专题 | 蔬菜花卉研究所 |
作者单位 | (1)Zhejiang Univ, James D Watson Inst Genome Sci, Hangzhou 310008, Peoples R China;(2)Chinese Acad Sci, Beijing Inst Genom, Key Lab Genome Sci & Informat, Beijing 101300, Peoples R China;(3)Chinese Acad Sci, Inst Comp Technol, Beijing 101300, Peoples R China;(4)Chongqing Univ Posts & Telecommun, Inst Bioinformat, Chongqing 400065, Peoples R China;(5)Chinese Acad Agr Sci, Inst Vegetables & Flowers, Beijing 100081, Peoples R China;(6)Zhejiang Univ, Coll Agr & Biotechnol, Dept Agron, Hangzhou 310029, Peoples R China |
推荐引用方式 GB/T 7714 | Zhang, Zhonghua,Deng, Yajun,Tan, Jun,et al. A genome-wide microsatellite polymorphism database for the Indica and Japonica rice[J]. DNA RESEARCH,2007,14(1):37-45. |
APA | Zhang, Zhonghua,Deng, Yajun,Tan, Jun,Hu, Songnian,Yu, Jun,&Xue, Qingzhong.(2007).A genome-wide microsatellite polymorphism database for the Indica and Japonica rice.DNA RESEARCH,14(1),37-45. |
MLA | Zhang, Zhonghua,et al."A genome-wide microsatellite polymorphism database for the Indica and Japonica rice".DNA RESEARCH 14.1(2007):37-45. |
个性服务 |
查看访问统计 |
相关权益政策 |
暂无数据 |
收藏/分享 |
除非特别说明,本系统中所有内容都受版权保护,并保留所有权利。
修改评论