Phylogeography of Thlaspi arvense (Brassicaceae) in China Inferred from Chloroplast and Nuclear DNA Sequences and Ecological Niche Modeling

CORC > 昆明植物研究所 > 中国科学院昆明植物研究所 > 中国科学院东亚植物多样性与生物地理学重点实验室

	Phylogeography of Thlaspi arvense (Brassicaceae) in China Inferred from Chloroplast and Nuclear DNA Sequences and Ecological Niche Modeling
	An, Miao; Zeng, Liyan; Zhang, Ticao; Zhong, Yang
刊名	INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
	2015-06-01
卷号	16 期号:6 页码:13339-13355
英文摘要	Thlaspi arvense is a well-known annual farmland weed with worldwide distribution, which can be found from sea level to above 4000 m high on the Qinghai-Tibetan Plateau (QTP). In this paper, a phylogeographic history of T. arvense including 19 populations from China was inferred by using three chloroplast (cp) DNA segments (trnL-trnF, rpl32-trnL and rps16) and one nuclear (n) DNA segment (Fe-regulated transporter-like protein, ZIP). A total of 11 chloroplast haplotypes and six nuclear alleles were identified, and haplotypes unique to the QTP were recognized (C4, C5, C7 and N4). On the basis of molecular dating, haplotypes C4, C5 and C7 have separated from others around 1.58 Ma for cpDNA, which corresponds to the QTP uplift. In addition, this article suggests that the T. arvense populations in China are a mixture of diverged subpopulations as inferred by hT/vT test (hT <= vT, cpDNA) and positive Tajima's D values (1.87, 0.05 < p < 0.10 for cpDNA and 3.37, p < 0.01 for nDNA). Multimodality mismatch distribution curves and a relatively large shared area of suitable environmental conditions between the Last Glacial Maximum (LGM) as well as the present time recognized by MaxEnt software reject the sudden expansion population model.
类目[WOS]	Biochemistry & Molecular Biology ; Chemistry, Multidisciplinary
研究领域[WOS]	Biochemistry & Molecular Biology ; Chemistry
关键词[WOS]	QINGHAI-TIBETAN PLATEAU ; LATE-FLOWERING STRAINS ; ARABIDOPSIS-THALIANA ; ENVIRONMENTAL-CHANGE ; MAXIMUM-LIKELIHOOD ; QUATERNARY CLIMATE ; NONCODING REGIONS ; GENETIC DIVERSITY ; CANADIAN WEEDS ; EVOLUTION
收录类别	SCI
语种	英语
WOS记录号	WOS:000357492800082
内容类型	期刊论文
源URL	[http://ir.kib.ac.cn/handle/151853/24982]
专题	昆明植物研究所_中国科学院东亚植物多样性与生物地理学重点实验室
推荐引用方式 GB/T 7714	An, Miao,Zeng, Liyan,Zhang, Ticao,et al. Phylogeography of Thlaspi arvense (Brassicaceae) in China Inferred from Chloroplast and Nuclear DNA Sequences and Ecological Niche Modeling[J]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES,2015,16(6):13339-13355.
APA	An, Miao,Zeng, Liyan,Zhang, Ticao,&Zhong, Yang.(2015).Phylogeography of Thlaspi arvense (Brassicaceae) in China Inferred from Chloroplast and Nuclear DNA Sequences and Ecological Niche Modeling.INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES,16(6),13339-13355.
MLA	An, Miao,et al."Phylogeography of Thlaspi arvense (Brassicaceae) in China Inferred from Chloroplast and Nuclear DNA Sequences and Ecological Niche Modeling".INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 16.6(2015):13339-13355.